Structural Bioinformatics (W2024)

Teaching materials for the course "Structural Bioinformatics" at FHWN.

Getting started

After some research, Google Colab is the best option.

Google Colab

Google colab is a free service that allows you to run jupyter notebooks in the cloud.

Link	Description
	Exercise 00: Crash course for Bio Data Scientists
	Exercise 01: Exploring and Analyzing Protein Structures in the PDB Database
	Exercise 02: Protein Structure and Modeling
	Exercise 03: Protein Dynamics
	Exercise 04: Protein Docking

Conda

You are free to use the files

For Linux, Mac or Windows (via WSL).

1. Create a new environment with conda:

   conda env create -f environment.yml

   This will create an environment called structbioinfo.

2. Activate the environment:

   conda activate structbioinfo

3. Update the environment for upcoming modifications:

   conda activate structbioinfo
   conda env update --file environment.yml --prune

4. In VSCode, select the interpreter to the one you just created.

License

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.