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Structural Bioinformatics (W2024)

Teaching materials for the course "Structural Bioinformatics" at FHWN.

Getting started

After some research, Google Colab is the best option.

Google Colab

Google colab is a free service that allows you to run jupyter notebooks in the cloud.

Link Description
Open In Colab Exercise 00: Crash course for Bio Data Scientists
Open In Colab Exercise 01: Exploring and Analyzing Protein Structures in the PDB Database
Open In Colab Exercise 02: Protein Structure and Modeling
Open In Colab Exercise 03: Protein Dynamics
Open In Colab Exercise 04: Protein Docking

Conda

You are free to use the files

For Linux, Mac or Windows (via WSL).

  1. Create a new environment with conda:

    conda env create -f environment.yml

    This will create an environment called structbioinfo.

  2. Activate the environment:

    conda activate structbioinfo
  3. Update the environment for upcoming modifications:

    conda activate structbioinfo
    conda env update --file environment.yml --prune
  4. In VSCode, select the interpreter to the one you just created.

License

BY-NC-SA

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.