LLM-based ontological extraction tools, including SPIRES
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Updated
Dec 20, 2024 - Jupyter Notebook
LLM-based ontological extraction tools, including SPIRES
Ontology for the description of human clinical features
Mondo Disease Ontology
Bootstrap an OBO Library ontology
A Tool to Annotate and Prioritize Exome Variants
Schema and generated objects for biolink data model and upper ontology
Simple Standard for Sharing Ontology Mappings
An ontology of cell types
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Ontology Access Kit: A python library and command line application for working with ontologies
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
Repository for the GA4GH phenopacket schema
LLM-driven curation assist tool
Medical action ontology
Ontology for representing scientific evidence and provenance information
Data transformation framework for LinkML data models
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
Modular environmental exposures ontology
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