Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add r-indicspecies package #27617

Merged
merged 12 commits into from
Sep 19, 2024
2 changes: 2 additions & 0 deletions recipes/r-indicspecies/bld.bat
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
"%R%" CMD INSTALL --build . %R_ARGS%
IF %ERRORLEVEL% NEQ 0 exit /B 1
3 changes: 3 additions & 0 deletions recipes/r-indicspecies/build.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
#!/bin/bash
export DISABLE_AUTOBREW=1
${R} CMD INSTALL --build . ${R_ARGS}
81 changes: 81 additions & 0 deletions recipes/r-indicspecies/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,81 @@
{% set version = '1.7.15' %}
{% set posix = 'm2-' if win else '' %}
{% set native = 'm2w64-' if win else '' %}

package:
name: r-indicspecies
version: {{ version|replace("-", "_") }}

source:
url:
- {{ cran_mirror }}/src/contrib/indicspecies_{{ version }}.tar.gz
- {{ cran_mirror }}/src/contrib/Archive/indicspecies/indicspecies_{{ version }}.tar.gz
sha256: 17bf1f6c3b4af5c373ae31e58ebeb81b6b469f0c90618c399983508637278340

build:
merge_build_host: True # [win]
number: 0
noarch: generic
rpaths:
- lib/R/lib/
- lib/
missing_dso_whitelist:
- '*/R.dll' # [win]
- '*/Rblas.dll' # [win]
- '*/Rlapack.dll' # [win]

requirements:
build:
- {{ posix }}zip # [win]
- cross-r-base {{ r_base }} # [build_platform != target_platform]
host:
- r-base
- r-permute
run:
- r-base
- r-permute

test:
commands:
- $R -e "library('indicspecies')" # [not win]
- "\"%R%\" -e \"library('indicspecies')\"" # [win]

about:
home: https://emf-creaf.github.io/indicspecies/
license: GPL-2.0-or-later
summary: Functions to assess the strength and statistical significance of the relationship
between species occurrence/abundance and groups of sites [De Caceres & Legendre
(2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche
breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
license_family: GPL2
license_file:
- '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'

extra:
recipe-maintainers:
- conda-forge/r
- PaulineSGN

# Package: indicspecies
# Type: Package
# Title: Relationship Between Species and Groups of Sites
# Version: 1.7.15
# Date: 2024-08-21
# Authors@R: c( person('Miquel', 'De Caceres', role=c('aut','cre'), email='[email protected]', comment = c(ORCID = "0000-0001-7132-2080")), person('Florian', 'Jansen', role='aut'), person('Noah', 'Dell', role='aut'))
# Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
# Depends: permute
# Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
# Encoding: UTF-8
# License: GPL (>= 2)
# URL: https://emf-creaf.github.io/indicspecies/
# BugReports: https://github.com/emf-creaf/indicspecies/issues
# RoxygenNote: 7.3.2
# LazyLoad: yes
# VignetteBuilder: knitr
# Config/testthat/edition: 3
# NeedsCompilation: no
# Packaged: 2024-08-21 10:07:03 UTC; miquel
# Author: Miquel De Caceres [aut, cre] (<https://orcid.org/0000-0001-7132-2080>), Florian Jansen [aut], Noah Dell [aut]
# Maintainer: Miquel De Caceres <[email protected]>
# Repository: CRAN
# Date/Publication: 2024-08-21 21:30:02 UTC
Loading