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Zarr Compressor Benchmark #276

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@madsbk madsbk commented Sep 5, 2023

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@madsbk madsbk added improvement Improves an existing functionality non-breaking Introduces a non-breaking change labels Sep 5, 2023
@madsbk madsbk force-pushed the zarr_compressor_benchmark branch from d534deb to 48c95ca Compare September 5, 2023 11:37
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Wanted to chime in with a couple of minor comments that I had as I was going through this PR


t0 = clock()
compressor.codec.decode(a, out=dst)
decode_time = clock() - t0

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This probably needs some GPU synchronization before measuring end time, doesn't it?

compressors = {
"lz4-default": Compressor(device=Device.CPU, codec=numcodecs.LZ4()),
"lz4-blosc": Compressor(
device=Device.CPU, codec=numcodecs.blosc.Blosc(cname="lz4")

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The default for Blosc is shuffle=SHUFFLE which changes the compression ratio a fair bit compared to LZ4. Might be good to indicate that in the str naming?

"snappy-nvcomp": Compressor(device=Device.GPU, codec=kvikio.zarr.Snappy()),
"cascaded-nvcomp": Compressor(device=Device.GPU, codec=kvikio.zarr.Cascaded()),
"gdeflate-nvcomp": Compressor(device=Device.GPU, codec=kvikio.zarr.Gdeflate()),
"bitcomp-nvcomp": Compressor(device=Device.GPU, codec=kvikio.zarr.Bitcomp()),

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Bitcomp requires the dtype which currently isn't an option here but is an option in BitcompManager. Might be good to expose that and add it here if possible.

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