Use python-isal's igzip_threaded module to replace igzip piping. #546
Workflow file for this run
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| lint: | |
| # Run for PRs only if they come from a forked repo (avoids duplicate runs) | |
| if: >- | |
| github.event_name != 'pull_request' || | |
| github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| timeout-minutes: 10 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| toxenv: [black, flake8, mypy] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python -m pip install tox | |
| - name: Run tox ${{ matrix.toxenv }} | |
| run: tox -e ${{ matrix.toxenv }} | |
| test: | |
| if: >- | |
| github.event_name != 'pull_request' || | |
| github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| timeout-minutes: 10 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "pypy-3.7"] | |
| optional-deps: [true] | |
| include: | |
| - os: macos-latest | |
| python-version: "3.10" | |
| optional-deps: true | |
| - os: ubuntu-20.04 | |
| python-version: "3.10" | |
| optional-deps: false | |
| - os: ubuntu-20.04 | |
| python-version: "3.10" | |
| optional-deps: false | |
| with-zstandard: true | |
| - os: windows-latest | |
| python-version: "3.10" | |
| steps: | |
| - name: Install optional tools macOS | |
| if: runner.os == 'macOS' && matrix.optional-deps | |
| run: brew install pigz pbzip2 isa-l zstd | |
| - name: Install optional tools Linux | |
| if: runner.os == 'Linux' && matrix.optional-deps | |
| run: sudo apt-get install pigz pbzip2 isal zstd | |
| - name: Remove xz | |
| if: runner.os == 'Linux' && !matrix.optional-deps | |
| run: while which xz; do sudo rm $(which xz); done | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python -m pip install tox | |
| - name: Test | |
| run: tox -e py | |
| - name: Test with zstandard | |
| if: matrix.with-zstandard | |
| run: tox -e zstd | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v3 | |
| deploy: | |
| timeout-minutes: 10 | |
| runs-on: ubuntu-latest | |
| needs: [lint, test] | |
| if: startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # required for setuptools_scm | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Make distributions | |
| run: | | |
| python -m pip install build | |
| python -m build | |
| ls -l dist/ | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_password }} |