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    43 repositories

    • conilab

      Public
      Computational Neuroimaging Lab Website
      SCSS
      •1.2k•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • parkinsons_pipeline

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • fproc

      Public
      Base for simple processing pipelines
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • xtract

      Public
      Shell
      •2•2•0•0•Updated Dec 9, 2024Dec 9, 2024

    • cudimot

      Public
      CUDA Diffusion Modelling Toolbox
      C
      •
      Other
      •1•5•0•0•Updated Nov 27, 2024Nov 27, 2024

    • brkraw

      Public
      BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
      Python
      •
      GNU General Public License v3.0
      •29•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • rodent_anat

      Public
      Anatomical pipeline for rodent MRI based on fsl_anat interface
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 6, 2024Nov 6, 2024

    • BRC_Pipeline

      Public
      The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.
      Shell
      •2•14•0•0•Updated Oct 25, 2024Oct 25, 2024

    • ON-Harmony_UKBB_pipeline

      Public
      Cross-scanner version of UK-Biobank Pipeline (v1)
      Shell
      •
      Other
      •0•4•0•0•Updated Oct 11, 2024Oct 11, 2024

    • fsort

      Public
      File sorter for pipeline preprocessing
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • BrainAge_COVID-19

      Public
      This repository contains the code for brain age estimation using the UKBB data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • NFacT

      Public
      Non-negative matrix Factorisation of Tractography data
      Shell
      •1•0•0•1•Updated Jun 18, 2024Jun 18, 2024

    • migtools

      Public
      Scripts to help handle MIG partitions of NVIDIA GPUs
      Python
      •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

    • XTRACT_Macaque_MultiTemplate

      Public
      XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).
      0•1•0•0•Updated Apr 17, 2024Apr 17, 2024

    • xtract_data

      Public
      HTML
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • xnat-nott

      Public
      Simple XNAT helpers based around Nottingham applications
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • xtract_divergence

      Public
      0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

    • fdt

      Public
      C++
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • demistifi_scripts

      Public
      Processing scripts for DEMISTIFI
      Python
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • EDDEN

      Public
      Jupyter Notebook
      •0•4•0•0•Updated Nov 15, 2023Nov 15, 2023

    • xnat-dicomqc

      Public
      XNAT container script to do simple configurable tag-based QC on scan DICOMs
      Python
      •1•2•0•0•Updated Nov 3, 2023Nov 3, 2023

    • brightmind_pipeline

      Public
      Procesing pipeline of BRIGhTMIND trial
      MATLAB
      •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • 3T_MRI_harmonisation

      Public
      Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
      Jupyter Notebook
      •2•1•0•0•Updated Sep 14, 2023Sep 14, 2023

    • trkvis

      Public
      Simple tractography visualisation tool
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • deltab

      Public
      Implementation of brain age prediction from Smith et al 2019
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • cmore_pipeline

      Public
      Analysis pipeline for CMORE data
      Python
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • xnat-autorun

      Public
      Script to automatically run a command on all sessions in a project
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 9, 2023Feb 9, 2023

    • xnat-imgqc

      Public
      XNAT container plugin to generate generic image-based QC metrics
      Python
      •0•1•0•0•Updated Feb 8, 2023Feb 8, 2023

    • usefultools

      Public
      Useful tools for public sharing
      Shell
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • PSO_code

      Public
      Particle Swarm Optimisation code to fit CEST spectra
      C
      •0•0•0•0•Updated Dec 6, 2022Dec 6, 2022