Feature/atac count #762
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Feature/atac count #762
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* Fix publishing in process_samples and process_batches * Add PR number to CHANGELOG
DriesSchaumont
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Aug 23, 2024
dorien-er
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Aug 27, 2024
rcannood
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Aug 27, 2024
* bp cells regress out - wip * install python * update changelog * blank lines * install full python * update python dependencies * move python dependencies * python alias * python-as-python3 * python-is-python3 * add pytest * update python environment * add test and logging, remove clutter * Apply suggestions from code review Co-authored-by: Robrecht Cannoodt <[email protected]> * address pr comments, add more unit tests * address pr comments * remove clutter * remove clutter * review code * allow providing input layers for scanpy regress_out * allow providing input layers for scanpy regress_out * Add CellRanger ATAC count (#762) * update changelog * revert rebase changes --------- Co-authored-by: Robrecht Cannoodt <[email protected]> Co-authored-by: Vladimir Shitov <[email protected]>
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Changelog
mapping/cellranger_atac_countcomponent to align ATAC data to reference and count peaksIssue ticket number and link
Contributes to #398
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Proposed changes are described in the CHANGELOG.md
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