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HPO is hard to find on OBO Foundry and BioPortal #10929

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nlharris opened this issue Dec 17, 2024 · 0 comments
Open

HPO is hard to find on OBO Foundry and BioPortal #10929

nlharris opened this issue Dec 17, 2024 · 0 comments
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@nlharris
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I tried searching for HPO on BioPortal and was puzzled not to find it. It turns out it’s listed as HP (https://bioportal.bioontology.org/ontologies/HP). HP is the term prefix, but HPO is definitely referred to (widely) as HPO. I asked BioPortal if there was a way to add that as a synonym for the ontology name (and noted that, more generally, a way to add synonyms for the ontology name or identifier would be a nice feature).

Jennifer (the lead BioPortal developer) replied (in the BioPortal issue:

The HPO acronym is already taken in BioPortal by the "Hypertension-Ontology" (https://bioportal.bioontology.org/ontologies/HPO).
I poked around the MOD standard website (https://github.com/FAIR-IMPACT/MOD), but I don't see any kind of metadata property that's used for housing synonyms for ontology names or identifiers. That said, I couldn't find any human readable documentation of the MOD standard, so it's possible I'm missing something.

I then went to look for HPO on the OBO Foundry, and discovered that it is also "hp" there, and is not findable if you search for HPO (see screenshot).
Screenshot 2024-12-16 at 4 27 54 PM

If I were on the HPO team, I would be bummed that users can't find HPO (by that name) in the two most popular biomedical ontology resources. I don't know what courses of action are available to you to address this.

[Note that this is not a bug, nor is it a typo, but I can't change those labels.]

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