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EFO-OBA mapping (growth factor measurements) #225

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ar-ibrahim opened this issue Mar 2, 2023 · 1 comment
Open

EFO-OBA mapping (growth factor measurements) #225

ar-ibrahim opened this issue Mar 2, 2023 · 1 comment
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ar-ibrahim commented Mar 2, 2023 •
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subject_id subject_label quality quality_label attribute attribute_label
EFO:0008265 platelet-derived growth factor receptor beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020381 fibroblast growth factor 20 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020387 fibroblast growth factor 9 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010782 fibroblast growth factor 19 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020360 epidermal growth factor receptor substrate 15-like 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008314 vascular endothelial growth factor receptor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020379 fibroblast growth factor 17 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020475 insulin-like growth factor-binding protein 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0004818 transforming growth factor beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020391 fibroblast growth factor receptor 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020650 platelet-derived growth factor subunit b measurement PATO:0000001 quality GO:0040007 growth
EFO:0004628 insulin like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0004762 vascular endothelial growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020388 fibroblast growth factor receptor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020382 fibroblast growth factor 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020847 vascular endothelial growth factor a, isoform 121 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020375 fibroblast growth factor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0009181 growth differentiation factor 15 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020471 inhibitor of growth protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010783 fibroblast growth factor 21 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008302 transforming growth factor-beta-induced protein ig-h3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020476 insulin-like growth factor-binding protein 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008315 vascular endothelial growth factor receptor 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020477 insulin-like growth factor-binding protein 5 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008161 insulin-like growth factor-binding protein 7 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020384 fibroblast growth factor 7 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008152 hepatocyte growth factor activator measurement PATO:0000001 quality GO:0040007 growth
EFO:0020389 fibroblast growth factor receptor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020648 platelet-derived growth factor c measurement PATO:0000001 quality GO:0040007 growth
EFO:0020780 transforming growth factor beta-1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020383 fibroblast growth factor 6 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020848 vascular endothelial growth factor c measurement PATO:0000001 quality GO:0040007 growth
EFO:0020376 fibroblast growth factor 10 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010924 proheparin-binding egf-like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0010784 fibroblast growth factor 5 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010804 vascular endothelial growth factor a measurement PATO:0000001 quality GO:0040007 growth
EFO:0010798 transforming growth factor-alpha measurement PATO:0000001 quality GO:0040007 growth
EFO:0008129 fibroblast growth factor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0006903 hepatocyte growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020478 insulin-like growth factor-binding protein 6 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008229 melanoma-derived growth regulatory protein measurement PATO:0000001 quality GO:0040007 growth
EFO:0020359 epidermal growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020781 transforming growth factor beta-2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008153 hepatocyte growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020377 fibroblast growth factor 12 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020473 insulin-like growth factor 1 receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020179 bdnf/nt-3 growth factors receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0010799 transforming growth factor-beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020438 heparin-binding egf-like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0009381 fibroblast growth factor 23 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020284 connective tissue growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020380 fibroblast growth factor 18 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008264 platelet-derived growth factor bb measurement PATO:0000001 quality GO:0040007 growth
EFO:0020386 fibroblast growth factor 8 isoform b measurement PATO:0000001 quality GO:0040007 growth
EFO:0008035 beta-nerve growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0008154 hepatocyte growth factor-like protein measurement PATO:0000001 quality GO:0040007 growth
EFO:0020378 fibroblast growth factor 16 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020782 transforming growth factor beta-3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020474 insulin-like growth factor-binding protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008130 fibroblast growth factor basic measurement PATO:0000001 quality GO:0040007 growth
EFO:0008297 teratocarcinoma-derived growth factor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0006900 endothelial growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020448 high affinity nerve growth factor receptor measurement PATO:0002070 affinity GO:0040007 growth
EFO:0020613 nt-3 growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020779 transforming growth factor beta receptor type 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020390 fibroblast growth factor receptor 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020425 growth arrest-specific protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020439 hepatoma-derived growth factor-related protein 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0009368 hepatocyte growth factor activator-like protein measurement PATO:0000001 quality GO:0040007 growth
@ar-ibrahim ar-ibrahim self-assigned this Mar 2, 2023
ar-ibrahim added a commit that referenced this issue Mar 9, 2023
@ar-ibrahim
Added new 'growth factor' terms
0c7bd18 
- issue #225
This was referenced Mar 9, 2023
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ar-ibrahim added a commit that referenced this issue Mar 9, 2023
@ar-ibrahim
Added new 'growth factor' terms (reviewed)
767a8bb 
- issue #225
ar-ibrahim added a commit that referenced this issue Mar 9, 2023
@ar-ibrahim
Added new 'growth factor' terms (reviewed 2)
c12a1d5 
- issue #225
@ar-ibrahim ar-ibrahim mentioned this issue Mar 16, 2023
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@rays22 Please review the mappings I added to efo_oba.sssom. I have a few comments on some of the terms which I summarized in the following table:

subject_id subject_label predicate_id object_id object_label
EFO:0004762 vascular endothelial growth factor measurement skos:closeMatch OBA:2050131 vascular endothelial growth factor A amount
EFO:0020847 vascular endothelial growth factor a, isoform 121 measurement skos:broadMatch OBA:2050131 vascular endothelial growth factor A amount
EFO:0010804 vascular endothelial growth factor a measurement skos:exactMatch OBA:2050131 vascular endothelial growth factor A amount
EFO:0006900 endothelial growth factor measurement skos:closeMatch OBA:2050131 vascular endothelial growth factor A amount
EFO:0008130 fibroblast growth factor basic measurement skos:exactMatch OBA:2050154 fibroblast growth factor 2 amount
EFO:0008129 fibroblast growth factor 2 measurement skos:exactMatch OBA:2050154 fibroblast growth factor 2 amount
  • Four EFO terms (vascular endothelial growth factor measurement; vascular endothelial growth factor a, isoform 121 measurement; vascular endothelial growth factor a measurement; endothelial growth factor measurement) were mapped to the same OBA term 'vascular endothelial growth factor A amount'. There is no PRO term for vascular endothelial growth factor but vascular_ endothelial growth factor A is synonymous with vascular endothelial growth factor, which is also synonymous with endothelial growth factor.

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