Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Request for new synonym [RYR1-related myopathy] #8501

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

katiermullen
Copy link
Collaborator

Closes #8293
-add exact synonyms
-fix typo in definition of MONDO:0009711

Closes #8293
-add exact synonyms
-fix typo in definition of MONDO:0009711
Copy link
Collaborator

@sabrinatoro sabrinatoro left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@katiermullen please see my comments

@@ -210861,7 +210861,7 @@ relationship: excluded_subClassOf MONDO:0019952 {source="DC-OMIM:255300", source
[Term]
id: MONDO:0009711
name: congenital fiber-type disproportion myopathy
def: "A rare genetic disorder caused by mutations in the TPM3, ACTA1, RYR1 or SEPN1 genes. It is inherited in an autosomal dominant or recessive pattern and rarely in an X-linked pattern. It manifests with myopathy throughout the body, particularly in the muscles of the shoulders, upper arms, hips, and thighs. Affected individuals may have contractures, lordosis, or scoliosis. In a minority of cases mild to severe breathing problems may occur." [NCIT:C120046]
def: "A rare genetic disorder caused by mutations in the TPM3, ACTA1, RYR1 and SEPN1 genes. It is inherited in an autosomal dominant or recessive pattern and rarely in an X-linked pattern. It manifests with myopathy throughout the body, particularly in the muscles of the shoulders, upper arms, hips, and thighs. Affected individuals may have contractures, lordosis, or scoliosis. In a minority of cases mild to severe breathing problems may occur." [NCIT:C120046]
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@katiermullen does this require a mutation in ALL of these genes? or in one of them or in one or more of them?

Copy link
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@sabrinatoro I just came across this discrepancy between the mondo definition and the NCI definition where the Mondo definition came from when I was researching this issue. Although the source definition uses "and" upon further research, I think "or" is correct based on this reference PMID:31578728, which I can include as a db-xref in the definition.

One question though - are the SC axioms ok since they are not always true?
Screenshot 2024-12-20 at 1 58 18 PM

Thank you for your help!

src/ontology/mondo-edit.obo Show resolved Hide resolved
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Request for new synonym [RYR1-related myopathy]
2 participants