Merge pull request #917 from ellert/mongodb-check #1353
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| name: Test | |
| on: | |
| pull_request: | |
| push: | |
| branches-ignore: | |
| - "pre-commit-ci*" | |
| concurrency: | |
| group: >- | |
| ${{ github.workflow }}- | |
| ${{ github.ref_type }}- | |
| ${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| env: | |
| # UTF-8 content may be interpreted as ascii and causes errors without this. | |
| LANG: C.UTF-8 | |
| IPP_DISABLE_JS: "1" | |
| JUPYTER_PLATFORM_DIRS: "1" | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.runs_on || 'ubuntu-20.04' }} | |
| timeout-minutes: 20 | |
| strategy: | |
| # Keep running even if one variation of the job fail | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - python: "3.9" | |
| - python: "3.8" | |
| cluster_type: mpi | |
| - python: "3.10" | |
| cluster_type: slurm | |
| container: slurmctld | |
| - python: "3.8" | |
| - python: "3.10" | |
| env: | |
| IPP_CONTROLLER_IP: "*" | |
| - python: "3.9" | |
| env: | |
| IPP_ENABLE_CURVE: "1" | |
| - python: "3.8" | |
| runs_on: windows-2019 | |
| - python: "3.9" | |
| runs_on: macos-14 | |
| - python: "3.11" | |
| - python: "3.12" | |
| pre: pre | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache conda environment | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/conda | |
| key: conda | |
| - name: Cache node_modules | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| node_modules | |
| key: ${{ runner.os }}-yarn-${{ hashFiles('yarn.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-yarn- | |
| - name: Set environment variables | |
| if: ${{ matrix.env }} | |
| env: | |
| MATRIX_ENV: ${{ toJSON(matrix.env) }} | |
| run: | | |
| python3 <<EOF | |
| import json | |
| import os | |
| matrix_env = json.loads(os.environ["MATRIX_ENV"]) | |
| with open(os.environ["GITHUB_ENV"], "a") as f: | |
| for key, value in matrix_env.items(): | |
| f.write(f"{key}={value}\n") | |
| EOF | |
| - name: Set up slurm | |
| if: ${{ matrix.cluster_type == 'slurm' }} | |
| run: | | |
| export DOCKER_BUILDKIT=1 | |
| export COMPOSE_DOCKER_CLI_BUILD=1 | |
| cd ci/slurm | |
| docker compose up -d --build | |
| - name: Install Python (conda) ${{ matrix.python }} | |
| if: ${{ matrix.cluster_type == 'mpi' }} | |
| run: | | |
| export MAMBA_ROOT_PREFIX=$HOME/conda | |
| test -d $MAMBA_ROOT_PREFIX || mkdir $MAMBA_ROOT_PREFIX | |
| wget -qO- https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba | |
| eval "$(./bin/micromamba shell hook -s posix)" | |
| micromamba activate | |
| micromamba install -y -c conda-forge mpich mpi4py python=${{ matrix.python }} | |
| echo "PATH=$MAMBA_ROOT_PREFIX/bin:$PATH" >> $GITHUB_ENV | |
| - name: Install Python ${{ matrix.python }} | |
| if: ${{ matrix.cluster_type != 'mpi' }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install ipyparallel itself | |
| run: | | |
| pip install --upgrade pip | |
| pip install --no-deps . | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade ipyparallel[test] | |
| - name: Install pre-release dependencies | |
| if: ${{ matrix.pre }} | |
| run: | | |
| pip install --pre --upgrade ipyparallel[test] 'https://github.com/ipython/ipykernel/archive/main.tar.gz#egg=ipykernel' | |
| - name: Install extra Python packages | |
| if: ${{ ! startsWith(matrix.python, '3.11') }} | |
| run: | | |
| pip install distributed joblib | |
| pip install --only-binary :all: matplotlib | |
| - name: Show environment | |
| run: pip freeze | |
| - name: Run tests in container ${{ matrix.container }} | |
| if: ${{ matrix.container }} | |
| run: echo "EXEC=docker exec -i ${{ matrix.container }}" >> $GITHUB_ENV | |
| - name: Run ${{ matrix.cluster_type }} tests | |
| if: ${{ matrix.cluster_type }} | |
| run: | | |
| ${EXEC:-} pytest -v --maxfail=2 --cov=ipyparallel ipyparallel/tests/test_${{ matrix.cluster_type }}.py | |
| - name: Run tests | |
| if: ${{ ! matrix.cluster_type }} | |
| run: | | |
| pytest -v --maxfail=3 --cov=ipyparallel | |
| - name: Fixup coverage permissions ${{ matrix.container }} | |
| if: ${{ matrix.container }} | |
| run: | | |
| ls -l .coverage* | |
| ${EXEC} chmod -R a+rw .coverage* | |
| - name: Submit codecov report | |
| uses: codecov/codecov-action@v4 | |
| - name: Report on slurm | |
| if: ${{ matrix.cluster_type == 'slurm' && failure() }} | |
| run: | | |
| set -x | |
| docker ps -a | |
| docker exec -i slurmctld squeue --states=all | |
| docker exec -i slurmctld sinfo | |
| docker logs slurmctld | |
| docker logs c1 | |
| docker logs c2 |