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Biology Guided Neural Networks

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  1. BGNN-trait-segmentation BGNN-trait-segmentation Public

    Jupyter Notebook 3 2

  2. Minnow_Segmented_Traits Minnow_Segmented_Traits Public

    Using trait segmentation to understand minnow trait evolution across an ecological gradient

    R 1 2

  3. Morphology-analysis Morphology-analysis Public

    Extract morphological characteristics from trait segmented fish

    Jupyter Notebook 1 2

  4. inhs inhs Public

    inhs related stuff

  5. ml_fish_seg ml_fish_seg Public

    Forked from DiamondKMG/ml_fish_seg

    r script that uses ml to segment fish/ label/ ruler in a single image into 3 separate images

    R

  6. SlicerDockers SlicerDockers Public

    Forked from pieper/SlicerDockers

    docker config files for slicer

    HTML

Repositories

Showing 10 of 17 repositories
  • Minnow_Segmented_Traits Public

    Using trait segmentation to understand minnow trait evolution across an ecological gradient

    hdr-bgnn/Minnow_Segmented_Traits’s past year of commit activity
    R 1 MIT 2 9 0 Updated Apr 22, 2024
  • Crop_image Public

    Small repository to store the cropping step of the BGNN Fish project

    hdr-bgnn/Crop_image’s past year of commit activity
    Python 0 MIT 1 3 0 Updated Nov 22, 2023
  • drexel_metadata_formatter Public

    Reformats the metadata output file from drexel_metadata repo

    hdr-bgnn/drexel_metadata_formatter’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 22, 2023
  • drexel_metadata Public
    hdr-bgnn/drexel_metadata’s past year of commit activity
    TeX 0 MIT 3 2 0 Updated Nov 22, 2023
  • BGNN-trait-segmentation Public
    hdr-bgnn/BGNN-trait-segmentation’s past year of commit activity
    Jupyter Notebook 3 MIT 2 2 0 Updated Nov 22, 2023
  • Morphology-analysis Public

    Extract morphological characteristics from trait segmented fish

    hdr-bgnn/Morphology-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 2 5 0 Updated Nov 22, 2023
  • BGNN_Core_Workflow Public

    First complet version of the workflow with snakemake

    hdr-bgnn/BGNN_Core_Workflow’s past year of commit activity
    Shell 0 MIT 2 6 0 Updated Nov 20, 2023
  • iqm Public

    source code for "Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species

    hdr-bgnn/iqm’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 15, 2022
  • traits_tool Public

    Tool to extract traits from segmented images

    hdr-bgnn/traits_tool’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 26, 2022
  • Start_with_OSC Public

    This repo intends to collect the information to start with Ohio Supercomputing Centre

    hdr-bgnn/Start_with_OSC’s past year of commit activity
    0 0 0 0 Updated Mar 8, 2022
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