v1.4.0-alpha.0

What's Changed

• Move detection (2d/3d filtering, structure splitting) to PyTorch by @matham in #440

Full Changelog: v1.3.3...v1.4.0alpha0

v1.3.3

What's Changed

• Unpin numpy by @IgorTatarnikov in #452
• Remove x86 macOS runners from the test suite by @IgorTatarnikov in #453
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #455
• Unpin numpy by @adamltyson in #457
• Schedule weekly tests by @IgorTatarnikov in #458
• Pin keras version to 3.5.0 by @IgorTatarnikov in #462
• Allow napari GUI to accept custom weights by @IgorTatarnikov in #460
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #461

Full Changelog: v1.3.2...v1.3.3

v1.3.2

What's Changed

• Conform to new linting rules by @IgorTatarnikov in #447
• temporarily depend on numpy<2 by @alessandrofelder in #448
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #445

Full Changelog: v1.3.1...v1.3.2

v1.3.1

What's Changed

• Update supported Python versions by @adamltyson in #436
• Add citation to readme by @adamltyson in #438
• Prevent zero underflow in volume by @matham in #437
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #441
• Standardise contact information in readme by @adamltyson in #442
• Added xfail to tests that fail due to logging bug by @IgorTatarnikov in #444

Full Changelog: v1.3.0...v1.3.1

v1.3.0

Move classification to PyTorch

This release changes the dependency for classification to PyTorch (from TensorFlow). Users are advised to create a new environment before upgrading.

What's Changed

• Update caching by @adamltyson in #422
• Updating to Keras 3.0 and migrating to PyTorch by @IgorTatarnikov in #418
• Update init.py by @adamltyson in #427
• Update final few lines to python 3.11 by @adamltyson in #428
• Moved force cpu into cellfinder function by @IgorTatarnikov in #430
• Remove test dependency duplication by @adamltyson in #431
• Update default inference batch size by @adamltyson in #432
• Enable MPS fallback by default by @IgorTatarnikov in #433
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #434

Full Changelog: v1.2.0...v1.3.0

v1.3.0rc2

What's Changed

• Remove test dependency duplication by @adamltyson in #431
• Update default inference batch size by @adamltyson in #432
• Enable MPS fallback by default by @IgorTatarnikov in #433

Full Changelog: v1.3.0rc1...v1.3.0rc2

v1.3.0rc1

What's Changed

• Update init.py by @adamltyson in #427
• Update final few lines to python 3.11 by @adamltyson in #428
• Moved force cpu into cellfinder function by @IgorTatarnikov in #430

Full Changelog: v1.3.0rc0...v1.3.0rc1

v1.3.0rc0

Release candidate to test move to torch

What's Changed

• Update caching by @adamltyson in #422
• Updating to Keras 3.0 and migrating to PyTorch by @IgorTatarnikov in #418

Full Changelog: v1.2.0...v1.3.0rc0

v1.2.0

Summary

• major performance improvements in cell candidate detection thanks to @matham 👏
• moved utility functionality to brainglobe-utils and re-use it here.
• tidying/maintenance of development related things (examples, CI)

What's Changed

• Import header from brainglobe-utils by @K-Meech in #399
• Separate napari image parameter to prevent magicgui slowdown by @matham in #401
• Add codecov token by @K-Meech in #403
• Allow turning off classification or detection in GUI by @matham in #402
• Support single z-stack tif file for input by @matham in #397
• Remove modular asv benchmarks by @sfmig in #406
• Adapt CI so it covers both new and old Macs, and installs required additional dependencies on M1 by @alessandrofelder in #408
• Optimize cell detection (#398) by @alessandrofelder in #407
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #412
• Simplify model download by @adamltyson in #414
• Remove examples by @adamltyson in #417
• Update badges to remove references to cellfinder-core by @adamltyson in #421
• Remove data loading code by @adamltyson in #420

Full Changelog: v1.1.3...v1.2.0

v1.1.3

What's Changed

• Cellfinder test fix by @IgorTatarnikov in #400

Full Changelog: v1.1.2...v1.1.3