v2.0.11

What's Changed

• Add api name of atlases to readme by @PolarBean in #422
• Add Prairie Vole atlas to list by @adamltyson in #420
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #424
• Standardising atlas file downloading by @viktorpm in #351
• Notify slack on scheduled test failure by @IgorTatarnikov in #427
• Fix typo in atlas list by @adamltyson in #431
• Fail gracefully if cache directory is read only by @IgorTatarnikov in #430
• Add extra check for response code fetching last_versions by @IgorTatarnikov in #432

Full Changelog: v2.0.10...v2.0.11

v2.0.10

What's Changed

• Schedule tests to run weekly by @IgorTatarnikov in #412
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #414
• updated age of cavefish atlas based on correction by author by @PolarBean in #415
• Atlas packaging template by @PolarBean in #400
• Make list atlas function more robust by @adamltyson in #417
• Add praire vole atlas packaging script by @sacha091 in #336
• Deal with downloaded atlases with _v in the name by @adamltyson in #419

New Contributors

• @sacha091 made their first contribution in #336

Full Changelog: v2.0.9...v2.0.10

v2.0.9

What's Changed

• update waxholm to newest version by @PolarBean in #395
• Allen Human brain incorrectly listed as 100 micron by @PolarBean in #398
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #401
• Create .brainglobe dir if it doesn't exist when fetching atlas versions by @IgorTatarnikov in #402

Full Changelog: v2.0.8...v2.0.9

v2.0.8

What's Changed

• Add cavefish atlas 🐟 by @alessandrofelder in #277
• add cavefish to readme by @alessandrofelder in #312
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #317
• Standardise contact information in readme by @adamltyson in #320
• Remove template script by @adamltyson in #325
• Ensure no allen_cord meshes are black by @adamltyson in #328
• Fix failing test by always using the same file from GIN by @IgorTatarnikov in #329
• Script to generate Allen mouse brain atlas with barrel annotations by @abisi in #313
• Fixed spelling, grammatical and formatting errors, and removed empty code box. by @kjungwoo5 in #335
• initial Axolotl Atlas Implementation by @saimaabdus19 in #327
• use capital letter of each word for axolotl main structures by @alessandrofelder in #343
• Update atlas list by @adamltyson in #345
• Add Axolotl Pooch hash by @saimaabdus19 in #347
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #346
• Corrected orientation of the axolotl atlas by @saimaabdus19 in #348
• Fixing admba by @viktorpm in #322
• Removal of spurious pixels by @saimaabdus19 in #349
• modal-filter annotations before meshing by @alessandrofelder in #350
• merge atlas_link and atlas_file_url by @alessandrofelder in #352
• add axolotl to readme by @alessandrofelder in #353
• Standardise bullet formatting to remove extra whitespace by @adamltyson in #355
• created table for atlases by @PolarBean in #357
• fixed bug where progress bar didn't update properly by @PolarBean in #369
• Loading atlas with no Internet by @saarah815 in #358

New Contributors

• @abisi made their first contribution in #313
• @kjungwoo5 made their first contribution in #335
• @saimaabdus19 made their first contribution in #327
• @saarah815 made their first contribution in #358

Full Changelog: v2.0.7...v2.0.8

v2.0.7

Dependency Slimming

Main purpose of this release is a number of small fixes to atlases, and slimming down of the dependencies of this package.

If you are only interested in the AtlasAPI, a default install will no longer fetch the dependencies that are required for generating a new atlas. If you were previously using this package to generate atlases, you will need to install it with the optional atlasgen dependency.

What's Changed

• Return brainglobe list in alphabetical order by @adamltyson in #298
• Return "Outside atlas" rather than key error by @adamltyson in #299
• Remove slow test marker by @adamltyson in #300
• Cache atlases to speed up CI by @adamltyson in #301
• Fixing human atlas script by @viktorpm in #290
• Fix AZBA by @adamltyson in #305
• fixing kim dev atlases by @viktorpm in #304
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #308
• Update supported Python versions by @adamltyson in #309
• Move pymcubes to an optional dependency. by @willGraham01 in #310

Full Changelog: v2.0.6...v2.0.7

v2.0.6

What's Changed

• add codecov token by @K-Meech in #269
• run CI on both types of Mac by @alessandrofelder in #272
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #278
• Fixes to Perens and Kim mouse atlases by @viktorpm in #271
• Fix orientation issue in perens lsfm atlas by @adamltyson in #283
• Minor fixes to the atlas update workflow by @adamltyson in #287
• Update use of brainio to brainglobe-utils by @adamltyson in #288

New Contributors

• @K-Meech made their first contribution in #269

Full Changelog: v2.0.5...v2.0.6

v2.0.5

What's Changed

• restore entrypoint by @alessandrofelder in #264
• add two simple additional validation functions by @alessandrofelder in #261

Full Changelog: v2.0.4...v2.0.5

v2.0.4

Dependency Updates

Removes unused brainio dependency and removes duplicate entries that are present in pyproject.toml.

What's Changed

• Remove duplicate dependencies in pyproject by @willGraham01 in #258

Full Changelog: v2.0.3...v2.0.4

v2.0.3

Removes brainglobe-utils circular dependency

Removes this package's un-necessary dependency on brainglobe-utils by retiring a function that is no longer in use across the BrainGlobe tool-suite.

What's Changed

• remove load_labelled_volume by @alessandrofelder in #257

Full Changelog: v2.0.2...v2.0.3

v2.0.2

What's Changed

• testing and fixing outdated atlas generation scripts by @viktorpm in #249
• Fixed broken link in the add atlas readme. by @PolarBean in #252
• Fixing princeton_mouse atlas mesh by @viktorpm in #253
• fix metadata key by @alessandrofelder in #255

New Contributors

• @viktorpm made their first contribution in #249
• @PolarBean made their first contribution in #252

Full Changelog: v2.0.1...v2.0.2