Sub-sample fastq files with seqtk

This Nextflow pipeline will sub-sample fastq files to a given number of reads. It can work with paired data or single end.

Current parameters are:

params.reads: path to reads, something like this: *fastq.gz
params.outdir: your output path
params.sample_size: number of reads

The pipeline was built in 30min with the help of Seqera AI.