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@bcbio

Blue Collar Bioinformatics

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

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  1. bcbioR bcbioR Public

    R package with well defined templates for most common pipelines

    R 5 1

  2. bcbio-nextgen bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 995 353

  3. cloudbiolinux cloudbiolinux Public

    Forked from chapmanb/cloudbiolinux

    CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

    Python

  4. bcbio-utils bcbio-utils Public

    Helper scripts for bcbio-nextgen

    Python 3

Repositories

Showing 10 of 23 repositories
  • bcbioR Public

    R package with well defined templates for most common pipelines

    bcbio/bcbioR’s past year of commit activity
    R 5 1 26 0 Updated Dec 10, 2024
  • nextflow-subsample Public

    subsampling fastq files for downstream samples

    bcbio/nextflow-subsample’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Nov 26, 2024
  • bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    bcbio/bcbioR-test-data’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 24, 2024
  • resources Public

    files used regularly in downstream analysis of NGS data

    bcbio/resources’s past year of commit activity
    0 MIT 0 0 0 Updated Oct 2, 2024
  • smrnaseq Public Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    bcbio/smrnaseq’s past year of commit activity
    Nextflow 0 MIT 128 0 1 Updated Sep 4, 2024
  • bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    bcbio/bcbio-nextgen’s past year of commit activity
    Python 995 MIT 353 131 3 Updated Aug 24, 2024
  • bcbio.github.io Public

    Blue Collar Bioinformatics website

    bcbio/bcbio.github.io’s past year of commit activity
    HTML 9 3 0 0 Updated Apr 30, 2024
  • hivdrm Public

    Detect HIV Drug Resitant Mutations using amplicon sequencing data

    bcbio/hivdrm’s past year of commit activity
    Python 1 MIT 1 0 0 Updated May 20, 2023
  • bcbio_validations Public

    Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

    bcbio/bcbio_validations’s past year of commit activity
    HTML 31 11 0 0 Updated Feb 12, 2022
  • bcbio_validation_workflows Public

    A community menagarie of automated variant validations using bcbio and the Common Workflow Language

    bcbio/bcbio_validation_workflows’s past year of commit activity
    Common Workflow Language 20 MIT 12 0 0 Updated Nov 3, 2021
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