This repo contains the materials for practical sessions, and will be updated accordingly.
The following modules will be used:
- Introduction
- How to look at files
- Scripting & regular expressions; Challenge 1
- How does sequencing data look like?
- Mapping & samtools
- Challenge 2
- Understanding sequencing data, incl. aDNA
- Genotype calling and genotype files
- Challenge 3
- Multi-VCFs, R for sequencing
- R for sequencing data plotting
- Challenge 4