Add several pairs-related methods #5739
Workflow file for this run
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| ################################################################################ | |
| # | |
| # Github actions trigger (workflow script) for building Macaulay2 | |
| # | |
| # See https://help.github.com/en/actions for the documentation. | |
| # | |
| ################################################################################ | |
| name: Build and Test Macaulay2 | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| schedule: | |
| - cron: '0 6 * * SUN' # runs tests on the main branch every Sunday at 06:00 UTC | |
| concurrency: | |
| # Cancel in-progress runs when a new workflow with the same group name is triggered | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| working-directory: M2/BUILD/build | |
| jobs: | |
| build: | |
| if: github.repository == 'Macaulay2/M2' || contains(github.ref, 'global') | |
| name: ${{ matrix.build-system }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| build-system: | |
| - autotools | |
| - cmake | |
| os: | |
| - ubuntu-24.04 | |
| - macos-13 | |
| compiler: | |
| - default | |
| include: | |
| # This build tests Clang rather than AppleClang (keep) | |
| - build-system: cmake | |
| os: macos-13 # TODO: switch to macos-14 for arm64 testing | |
| compiler: clang-15 | |
| cxx: clang++ | |
| cc: clang | |
| exclude: | |
| - build-system: cmake | |
| os: macos-13 | |
| compiler: default | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # ---------------------- | |
| # Install missing tools and libraries for macOS | |
| # ---------------------- | |
| - name: Install requirements for macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew config | |
| brew tap macaulay2/tap | |
| brew install --overwrite python | |
| brew install automake boost tbb ccache ctags texinfo llvm make ninja yasm libffi msolve | |
| brew install --only-dependencies macaulay2/tap/M2 | |
| brew link factory --force | |
| # ---------------------- | |
| # Install missing tools and libraries for Linux | |
| # ---------------------- | |
| - name: Install requirements for Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo add-apt-repository -y -n ppa:macaulay2/macaulay2 | |
| sudo apt-get update | |
| sudo apt-get install -y -q --no-install-recommends clang-16 gfortran libtool-bin ninja-build yasm ccache | |
| sudo apt-get install -y -q --no-install-recommends liblzma-dev libboost-stacktrace-dev \ | |
| libncurses-dev libncurses5-dev libreadline-dev libeigen3-dev libopenblas-dev libxml2-dev \ | |
| libgc-dev libgdbm-dev libglpk-dev libgmp3-dev libgtest-dev libmpfr-dev libmpfi-dev libntl-dev gfan \ | |
| libgivaro-dev libboost-regex-dev fflas-ffpack libflint-dev libmps-dev libfrobby-dev \ | |
| libsingular-dev singular-data libcdd-dev cohomcalg topcom 4ti2 libnormaliz-dev normaliz coinor-csdp \ | |
| libnauty-dev nauty lrslib polymake pipx phcpack w3c-markup-validator libtbb-dev qepcad libomp-16-dev msolve | |
| # ---------------------- | |
| # Steps common to all build variants | |
| # ---------------------- | |
| - name: Prepare build environment | |
| run: | | |
| echo "CC=${{ matrix.cc }}" >> $GITHUB_ENV | |
| echo "CXX=${{ matrix.cxx }}" >> $GITHUB_ENV | |
| if [[ "${{ runner.os }}" == "Linux" ]] | |
| then shopt -s expand_aliases | |
| alias llvm-config="/usr/bin/llvm-config-16" | |
| echo "/usr/lib/ccache" >> $GITHUB_PATH | |
| echo "/home/linuxbrew/.linuxbrew/bin" >> $GITHUB_PATH | |
| else echo `brew --prefix ccache`/libexec >> $GITHUB_PATH | |
| echo `brew --prefix make `/libexec/gnubin >> $GITHUB_PATH | |
| echo `brew --prefix llvm`/bin >> $GITHUB_PATH | |
| PATH=`brew --prefix llvm`/bin:$PATH | |
| echo `brew --prefix libtool`/libexec/gnubin >> $GITHUB_PATH | |
| fi | |
| # Necessary for clang to find the right libomp | |
| echo "LIBRARY_PATH=`llvm-config --libdir`" >> $GITHUB_ENV | |
| - uses: actions/cache@v4 | |
| if: matrix.build-system == 'cmake' | |
| id: restore-cache | |
| with: | |
| path: | | |
| ~/.ccache | |
| ~/work/M2/M2/M2/BUILD/build/usr-host | |
| key: build-cache-${{ runner.os }}-${{ matrix.compiler }}-${{ matrix.build-system }}-${{ hashFiles('**/cmake/*-libraries.cmake', '.github/workflows/test_build.yml') }} | |
| # ---------------------- | |
| # Configure and build M2 using CMake | |
| # ---------------------- | |
| - name: Configure Macaulay2 using CMake | |
| if: matrix.build-system == 'cmake' | |
| run: | | |
| cmake -S../.. -B. -GNinja \ | |
| -DCMAKE_BUILD_TYPE=Release -DBUILD_NATIVE=OFF \ | |
| -DCMAKE_PREFIX_PATH="`brew --prefix`;`brew --prefix libffi`" \ | |
| -DCMAKE_INSTALL_PREFIX=/usr \ | |
| --debug-trycompile | |
| - name: Build libraries using Ninja | |
| if: matrix.build-system == 'cmake' | |
| run: | | |
| cmake --build . --target build-libraries build-programs | |
| - name: Build Macaulay2 using Ninja | |
| if: matrix.build-system == 'cmake' | |
| run: | | |
| cmake --build . --target M2-core M2-emacs install-packages | |
| if [[ "${{ runner.os }}" == "Linux" ]] && [[ "${{ matrix.build-system }}" == "cmake" ]]; then | |
| sudo apt-get install -y -q --no-install-recommends dpkg-dev | |
| echo "GIT_COMMIT=`git describe --dirty --always --match HEAD`" >> $GITHUB_ENV | |
| cpack -G DEB | |
| fi | |
| # ---------------------- | |
| # Configure and build M2 using Autotools | |
| # ---------------------- | |
| - name: Configure Macaulay2 using Autotools | |
| if: matrix.build-system == 'autotools' | |
| run: | | |
| ../../autogen.sh | |
| export PYVERSION=`python3 -c "from sys import version_info; \ | |
| print(f'{version_info.major}.{version_info.minor}')"` | |
| export CPPFLAGS="-I`brew --prefix`/include \ | |
| -I`brew --prefix libomp`/include \ | |
| -I`brew --prefix readline`/include" | |
| export LDFLAGS="-L`brew --prefix`/lib \ | |
| -L`brew --prefix libomp`/lib \ | |
| -L`brew --prefix readline`/lib \ | |
| -L/Library/Frameworks/Python.framework/Versions/${PYVERSION}/lib" | |
| export F77=gfortran-14 | |
| ../../configure --enable-download --with-system-gc | |
| - name: Build Macaulay2 using Make | |
| if: matrix.build-system == 'autotools' | |
| run: | | |
| make -j$(nproc 2>/dev/null || sysctl -n hw.logicalcpu) | |
| # ---------------------- | |
| # Run tests | |
| # ---------------------- | |
| - name: Run Tests using CTest | |
| if: matrix.build-system == 'cmake' && runner.os == 'macOS' | |
| run: | | |
| set -xe | |
| ./M2 -q --check 1 | |
| ./M2 -q --check 2 | |
| ./M2 -q --check 3 | |
| cmake --build . --target M2-tests | |
| cmake --build . --target M2-unit-tests | |
| cmake --build . --target memtailor-unit-tests mathic-unit-tests mathicgb-unit-tests | |
| ctest -j1 --output-on-failure -R "unit-tests" | |
| ctest -j4 --output-on-failure -R "ComputationsBook" | |
| # TODO: add Macaulay2/tests/engine when https://github.com/Macaulay2/M2/issues/1213 is fixed | |
| - name: Run Tests using Autotools | |
| if: matrix.build-system == 'autotools' && runner.os == 'Linux' && matrix.compiler == 'default' | |
| run: | | |
| make check -o check-in-libraries | |
| make -C Macaulay2/html-check-links check | |
| - name: Validate HTML documentation | |
| if: matrix.build-system == 'autotools' && runner.os == 'Linux' | |
| run: | | |
| pipx install html5validator | |
| if test ${{ github.event_name }} = pull_request | |
| then | |
| git fetch --depth=1 origin development | |
| # validate everything if any changes to Core | |
| if test "$(git diff --stat origin/development HEAD -- ../../Macaulay2/m2)" | |
| then | |
| make validate-html | |
| else | |
| # otherwise, just validate HTML docs for packages that have been updated | |
| PACKAGES=$(git diff --stat origin/development HEAD -- ../../Macaulay2/packages/ | grep -Po "(?<=Macaulay2/packages/)[^/\.]*(?=\.m2|/)" | uniq | xargs) | |
| make validate-html PACKAGES="$PACKAGES" | |
| fi | |
| else | |
| # if not a pull request (scheduled or pre-master builds), then validate everything | |
| make validate-html | |
| fi | |
| # ---------------------- | |
| # Upload build artifacts | |
| # ---------------------- | |
| - name: Upload build logs | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.build-system }}-${{ matrix.os }}-${{ matrix.compiler }}-logs | |
| path: | | |
| # Autotools | |
| M2/BUILD/build/config.log | |
| M2/BUILD/build/check-configure/tmp/config.log | |
| M2/BUILD/build/include/* | |
| M2/BUILD/build/libraries/*/build/*/config.log | |
| # CMake | |
| M2/BUILD/build/CMakeCache.txt | |
| M2/BUILD/build/CMakeFiles/CMakeError.log | |
| M2/BUILD/build/CMakeFiles/CMakeOutput.log | |
| M2/BUILD/build/libraries/*/build/config.log | |
| # package example errors | |
| M2/BUILD/build/usr-dist/common/share/doc/Macaulay2/*/example-output/*.errors | |
| # package test errors under Ubuntu | |
| /tmp/M2-*/*.tmp | |
| /tmp/M2-*/*.m2 | |
| # Test errors | |
| M2/BUILD/build/Macaulay2/tests/*/*.errors | |
| - name: Upload Macaulay2 package for Ubuntu (x86_64) | |
| if: matrix.build-system == 'cmake' && runner.os == 'Linux' && success() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Macaulay2-${{ env.GIT_COMMIT }}-ubuntu-x86_64 | |
| path: | | |
| M2/BUILD/build/Macaulay2-* | |
| retention-days: 1 |