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ODK 1.5.3 (October 2024)
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@gouttegd gouttegd released this 29 Oct 17:38
· 170 commits to master since this release
v1.5.3
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gouttegd Damien Goutte-Gattat
GPG key ID: 6F7F0F91D138FC7B
Learn about vigilant mode.
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GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

This is a point release of the Ontology Development Kit.

Changes since version 1.5.2

Software updates

  • Base image updated to Ubuntu 24.04
  • Python updated to version 3.12
  • Several Python packages updated, including
    • Ontology Access Kit (oaklib 0.6.18)
    • LinkML (linkml 1.8.5 and linkml-runtime 1.8.3)
    • SSSOM (sssom-schema 1.0.0 and sssom 0.4.12)
  • KGCL plugin for ROBOT updated to version 0.5.0
  • SSSOM command-line tool and ROBOT plugin updated to version 0.9.0

Bugfixes

  • Fix permission issue on macOS when seeding (#1105)
  • Fix permission on the SSH socket (#1096)
  • Fix lack of robustness of the odk.py script (#1097)

BREAKING CHANGE

J2cli, which is no longer maintained, has been removed and replaced with Jinjanator. Standard ODK-generated workflows never used that tool, but if you have custom workflows that are using the j2 command, you will need to update them to make them use jinjanate instead.

How to upgrade

Run

docker pull obolibrary/odkfull:latest

to get the latest version of the image.

As for other point releases, there is no need to update your ODK-managed repositories with make update_repo.

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