updates for #904

EnvironmentOntology · Jun 7, 2020 · c5660c3 · c5660c3
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diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -24838,9 +24838,14 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000697> ObjectSomeValuesFrom(<
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_01000698> (debris flow)
 
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> < https://en.wikipedia.org/wiki/Debris_flow>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01000698> "A mass wasting flow during which water-laden masses of soil and fragmented rock rush down the slopes of elevations, funnel into stream channels, entrain objects in their paths, and form thick, muddy deposits on valley floors.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01000698> "environmental_hazards")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01000698> "debris flow"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000698> <http://purl.obolibrary.org/obo/ENVO_01000696>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000698> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_00000100>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000698> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_00001995>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000698> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_00001998>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000698> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_01000650>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_01000699> (lahar)
 

diff --git a/src/envo/imports/chebi_terms.txt b/src/envo/imports/chebi_terms.txt
@@ -91,7 +91,8 @@ http://purl.obolibrary.org/obo/CHEBI_15379 # dioxygen
 http://purl.obolibrary.org/obo/CHEBI_78298 # environmental contaminant
 http://purl.obolibrary.org/obo/CHEBI_18276 # dihydrogen
 http://purl.obolibrary.org/obo/CHEBI_49987 # monoatomic krypton
-http://purl.obolibrary.org/obo/CHEBI_33687 # diatomic helium
+http://purl.obolibrary.org/obo/CHEBI_33687 # diatomic helium
+http://purl.obolibrary.org/obo/CHEBI_30218 # helium-3 atom
 http://purl.obolibrary.org/obo/CHEBI_49994 # monoatomic neon
 http://purl.obolibrary.org/obo/CHEBI_49992 # argon(•1+)
 http://purl.obolibrary.org/obo/CHEBI_17997 # dinitrogen
@@ -155,7 +156,8 @@ http://purl.obolibrary.org/obo/CHEBI_27153 # monoatomic trication
 http://purl.obolibrary.org/obo/CHEBI_27363 # zinc atom
 http://purl.obolibrary.org/obo/CHEBI_27560 # boron atom
 http://purl.obolibrary.org/obo/CHEBI_27573 # silicon atom
-http://purl.obolibrary.org/obo/CHEBI_27594 # carbon atom
+http://purl.obolibrary.org/obo/CHEBI_27594 # carbon atom
+http://purl.obolibrary.org/obo/CHEBI_36928 # carbon-13 atom
 http://purl.obolibrary.org/obo/CHEBI_28073 # chromium atom
 http://purl.obolibrary.org/obo/CHEBI_28112 # nickel atom
 http://purl.obolibrary.org/obo/CHEBI_28659 # phosphorus atom
@@ -174,7 +176,8 @@ http://purl.obolibrary.org/obo/CHEBI_30356 # isobutyl group
 http://purl.obolibrary.org/obo/CHEBI_30496 # sulfur hexafluoride
 http://purl.obolibrary.org/obo/CHEBI_30513 # antimony atom
 http://purl.obolibrary.org/obo/CHEBI_30514 # caesium atom
-http://purl.obolibrary.org/obo/CHEBI_30563 # silicon dioxide
+http://purl.obolibrary.org/obo/CHEBI_30563 # silicon dioxide
+http://purl.obolibrary.org/obo/CHEBI_26675 # silicic acid
 http://purl.obolibrary.org/obo/CHEBI_31001 # montanic acid
 http://purl.obolibrary.org/obo/CHEBI_31002 # montanate
 http://purl.obolibrary.org/obo/CHEBI_32627 # leucinate
@@ -241,7 +244,8 @@ http://purl.obolibrary.org/obo/CHEBI_48356 # protic solvent
 http://purl.obolibrary.org/obo/CHEBI_48360 # amphiprotic solvent !!! preliminary !!!
 http://purl.obolibrary.org/obo/CHEBI_48706 # antagonist
 http://purl.obolibrary.org/obo/CHEBI_49470 #  aluminium(3+)
-http://purl.obolibrary.org/obo/CHEBI_49637 # hydrogen atom
+http://purl.obolibrary.org/obo/CHEBI_49637 # hydrogen atom
+http://purl.obolibrary.org/obo/CHEBI_29238 # tritium atom
 http://purl.obolibrary.org/obo/CHEBI_50047 # organic amino compound
 http://purl.obolibrary.org/obo/CHEBI_50094 # sulfur coordination entity
 http://purl.obolibrary.org/obo/CHEBI_50183 # P450 inhibitor
@@ -280,10 +284,14 @@ http://purl.obolibrary.org/obo/CHEBI_78433 # refrigerant
 http://purl.obolibrary.org/obo/CHEBI_78616 # carbohydrates and carbohydrate derivatives
 http://purl.obolibrary.org/obo/CHEBI_79387 # trivalent inorganic anion
 http://purl.obolibrary.org/obo/CHEBI_79388 # divalent inorganic anion
-http://purl.obolibrary.org/obo/CHEBI_79389 # monovalent inorganic anion
+http://purl.obolibrary.org/obo/CHEBI_79389 # monovalent inorganic anion
+http://purl.obolibrary.org/obo/CHEBI_72695 # organic molecule
+http://purl.obolibrary.org/obo/CHEBI_24835 # inorganic molecular entity
 http://purl.obolibrary.org/obo/CHEBI_8108 # pheophytin
 http://purl.obolibrary.org/obo/CHEBI_83056 # Daphnia magna metabolite
-http://purl.obolibrary.org/obo/CHEBI_83348 # chlorophyllide a(2-)
+http://purl.obolibrary.org/obo/CHEBI_83348 # chlorophyllide a(2-)
+http://purl.obolibrary.org/obo/CHEBI_17045 # dinitrogen oxide, nitrous oxide
+http://purl.obolibrary.org/obo/CHEBI_134024 # chlorofluorcarbon
 http://purl.obolibrary.org/obo/RO_0000087 # has role
 http://purl.obolibrary.org/obo/chebi#BFO_0000051
 http://purl.obolibrary.org/obo/chebi#has_functional_parent

diff --git a/src/envo/modules/chemical_concentration.csv b/src/envo/modules/chemical_concentration.csv
@@ -29,6 +29,14 @@ ENVO:3100028,,CHEBI:27295,violaxanthin,ENVO:00002006,liquid water
 ENVO:3100029,,CHEBI:27547,zeaxanthin,ENVO:00002006,liquid water
 ENVO:3100034,,CHEBI:26675,silicic acid,ENVO:00002006,liquid water
 ENVO:3100036,,CHEBI:28966,chlorophyll,ENVO:00002006,liquid water
+ENVO:3100037,,CHEBI:17632,nitrate,ENVO:00002149,sea water
+ENVO:3100038,,CHEBI:26020,phosphate,ENVO:00002149,sea water
+ENVO:3100039,,CHEBI:26675,silicic acid,ENVO:00002149,sea water
+ENVO:3100040,,CHEBI:28938,ammonium,ENVO:00002149,sea water
+ENVO:3100041,,CHEBI:16301,nitrite,ENVO:00002149,sea water
+ENVO:3100042,,CHEBI:36928,carbon-13 atom,ENVO:00002149,sea water
+ENVO:3100043,,CHEBI:27594,carbon atom,ENVO:00002149,sea water
+ENVO:3100060,,CHEBI:15379,dioxygen,ENVO:00002149,sea water
 ENVO:3200002,,CHEBI:22927,bromine,ENVO:04000007,lake water
 ENVO:3200003,,CHEBI:33369,cerium,ENVO:04000007,lake water
 ENVO:3200004,,CHEBI:27638,cobalt,ENVO:04000007,lake water
@@ -87,4 +95,3 @@ ENVO:3200056,,CHEBI:27007,tin,ENVO:01000406,snow
 ENVO:3200057,,CHEBI:33341,titanium,ENVO:01000406,snow
 ENVO:3200058,,CHEBI:33331,yttrium,ENVO:01000406,snow
 ENVO:3200059,,CHEBI:16199,urea,ENVO:00002006,liquid water
-ENVO:3100060,,CHEBI:15379,dioxygen,ENVO:00002149,sea water