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<!DOCTYPE html>
<html>
<head>
<title>Raidionics</title>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="icon" href="data:image/svg+xml,<svg xmlns=%22http://www.w3.org/2000/svg%22 viewBox=%220 0 100 100%22><text y=%22.9em%22 font-size=%2290%22>🧠</text></svg>">
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<style>
body,h1,h2,h3,h4,h5,h6 {font-family: "Raleway", sans-serif}
body, html {
height: 100%;
line-height: 1.8;
}
.title {
line-height: 1.0;
color: white;
text-align: center;
margin: auto;
padding-top: 350px;
}
/* Full height image header */
.bgimg-1 {
background-position: center;
background-size: cover;
background-image: url("/assets/raidionics-interface-example.png");
min-height: 100%;
}
.pipeline {
background-image: url("/assets/raidionics-pipeline.png");
background-size: 100%;
object-fit: contain;
width: 800px;
}
/* Raidionics gif */
.raidionics {
background-image: url("/assets/raidionics_preview.gif");
background-size: 100%;
object-fit: contain;
}
/* Raidionics 3D Slicer gif */
.raidionics-slicer {
background-image: url("/assets/raidionics-slicer-rads.gif");
background-size: 100%;
object-fit: contain;
}
.w3-bar .w3-button {
padding: 16px;
}
</style>
</head>
<body>
<!-- Navbar (sit on top) -->
<div class="w3-top">
<div class="w3-bar w3-white w3-card" id="myNavbar">
<a href="#home" class="w3-bar-item w3-button w3-wide">Raidionics</a>
<!-- Right-sided navbar links -->
<div class="w3-right w3-hide-small">
<a href="#about" class="w3-bar-item w3-button"><i class="fa fa-th"></i> ABOUT</a>
<a href="#team" class="w3-bar-item w3-button"><i class="fa fa-user"></i> TEAM</a>
<a href="#publications" class="w3-bar-item w3-button"><i class="fa fa-book"></i> PUBLICATIONS</a>
<a href="#download" class="w3-bar-item w3-button"><i class="fa fa-cloud-download" aria-hidden="true"></i>DOWNLOAD</a>
<a href="#contact" class="w3-bar-item w3-button"><i class="fa fa-envelope"></i> CONTACT</a>
</div>
<!-- Hide right-floated links on small screens and replace them with a menu icon -->
<a href="javascript:void(0)" class="w3-bar-item w3-button w3-right w3-hide-large w3-hide-medium" onclick="w3_open()">
<i class="fa fa-bars"></i>
</a>
</div>
</div>
<!-- Sidebar on small screens when clicking the menu icon -->
<nav class="w3-sidebar w3-bar-block w3-black w3-card w3-animate-left w3-hide-medium w3-hide-large" style="display:none" id="mySidebar">
<a href="javascript:void(0)" onclick="w3_close()" class="w3-bar-item w3-button w3-large w3-padding-16">Close ×</a>
<a href="#about" onclick="w3_close()" class="w3-bar-item w3-button">ABOUT</a>
<a href="#team" onclick="w3_close()" class="w3-bar-item w3-button">TEAM</a>
<a href="#publications" onclick="w3_close()" class="w3-bar-item w3-button">PUBLICATIONS</a>
<a href="#download" onclick="w3_close()" class="w3-bar-item w3-button">ABOUT</a>
<a href="#contact" onclick="w3_close()" class="w3-bar-item w3-button">CONTACT</a>
</nav>
<!-- Header with full-height image -->
<header class="bgimg-1 w3-display-container w3-grayscale-min" id="home">
<div class="title">
<span class="w3-xxxlarge">Pre- and post-operative central nervous <br> system tumor segmentation <br> and standardized reporting</span><br>
<span class="w3-xlarge"><br> A software platform for the analysis and visualization of neurological MR scans</span><br>
<!-- <span class="w3-large">Stop wasting valuable time with projects that just isn't you.</span>-->
<!-- <p><a href="#download" class="w3-button w3-white w3-padding-large w3-large w3-margin-top w3-opacity w3-hover-opacity-off">Start now</a></p>-->
</div>
<!-- About Section -->
<div class="w3-container" style="padding:20px 16px" id="start">
<div class="w3-row-padding w3-center" style="margin-top:30px">
<div class="w3-quarter">
<p></p>
</div>
<div class="w3-quarter">
<p><a href="#download" class="w3-button w3-white w3-padding-large w3-large">Try now</a></p>
</div>
<div class="w3-quarter" style="margin-left:-50px">
<p><a href="https://github.com/raidionics" class="w3-button w3-white w3-padding-large w3-large">View on GitHub</a></p>
</div>
</div>
</div>
</header>
<!-- About Section -->
<div class="w3-container" style="padding:128px 16px" id="about">
<h1 class="w3-center">ABOUT Raidionics</h1>
<h3 class="w3-center">A description of the different use-cases supported by Raidionics, along with Youtube presentation videos,
are available on our <a href="https://github.com/raidionics/Raidionics/wiki"> <strong>wiki</strong></a>.</h3>
<div class="w3-half">
<p class="pipeline"><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></p><br>
</div>
<div class="w3-half">
<span class="fa fa-pencil-square w3-xxlarge w3-center"> Segmentation</span>
<p class="w3-large"> The most common central nervous system tumor types can be segmented pre-operatively: <i>glioblastomas</i>, <i>diffuse lower-grade gliomas</i>,
<i>meningiomas</i>, and <i>metastases</i>. Early post-operative segmentation is limited to the glioblastoma subtype.</p>
<p class="w3-large"> All models have been trained using patient data from our partnered hospitals, using the AGU-Net architecture (more details available in the <a href="#publications">Publications</a> section).</p>
</div>
<div class="w3-half">
<span class="fa fa-pie-chart w3-xxlarge w3-center"> Standardized reporting (RADS) </span>
<p class="w3-large"> Pre-operatively, the standardized reports include the following tumor characteristics,
all computed in the MNI reference space: volume, multifocality, laterality, location w.r.t. cortical structures
(MNI, Harvard-Oxford, and Schaefer atlases), and location w.r.t. subcortical structures (BCB atlas).
The computational pipeline is illustrated to the left.</p>
<p class="w3-large"> Post-operatively, the rest tumor volume and extent-of-resection are automatically computed.</p>
</div>
<div class="w3-half">
<span class="fa fa-hospital-o w3-xxlarge w3-center"> Hospital partners </span>
<p class="w3-medium"> Northwest Clinics (Alkmaar), Amsterdam University Medical Centers, University Medical Center Groningen,
Medical Center Haaglanden (The Hague), Humanitas Research Hospital (Milano), Hôpital Lariboisière (Paris),
University of California San Francisco Medical Center, Medical Center Slotervaart (Amsterdam),
St Elisabeth Hospital (Tilburg), University Medical Center Utrecht, Medical University Vienna,
Isala hospital (Zwolle), St. Olavs hospital (Trondheim), Sahlgrenska University Hospital (Gothenburg),
Brigham and Women's Hospital (Boston), and Oslo University Hospital.</p>
</div>
</div>
</div>
<!-- Team Section -->
<div class="w3-container w3-blue-gray" style="padding:128px 16px" id="team">
<h1 class="w3-center">ORIGINAL TEAM</h1>
<p class="w3-center w3-large">Core participants</p>
<div class="w3-row-padding" style="margin-top:64px">
<div class="w3-col l3 m6 w3-margin-bottom" style="margin:auto">
<div class="w3-card">
<img src="/assets/photo-david.png" alt="David" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>David Bouget</h3>
<p class="w3-opacity">Lead developer, maintainer</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
<div class="w3-col l3 m6 w3-margin-bottom">
<div class="w3-card">
<img src="/assets/photo-andre.png" alt="Andre" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>André Pedersen</h3>
<p class="w3-opacity">DevOps engineer</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
<div class="w3-col l3 m6 w3-margin-bottom">
<div class="w3-card">
<img src="/assets/photo-demah.png" alt="Demah" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>Demah Alsinan</h3>
<p class="w3-opacity">Designer</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
<div class="w3-col l3 m6 w3-margin-bottom">
<div class="w3-card">
<img src="/assets/photo-valeria.png" alt="Valeria" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>Valeria Gaitan</h3>
<p class="w3-opacity">Designer</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
</div>
<div class="w3-row-padding" style="margin-top:64px">
<div class="w3-col l3 m6 w3-margin-bottom" style="margin:auto">
<div class="w3-card">
<img src="/assets/photo-ingerid.png" alt="Ingerid" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>Ingerid Reinertsen</h3>
<p class="w3-opacity">Project manager</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
<div class="w3-col l3 m6 w3-margin-bottom">
<div class="w3-card">
<img src="/assets/photo-ole.png" alt="Ole" style="width:50%; margin-left:23.5%">
<div class="w3-container w3-light-grey">
<h3>Ole Solheim</h3>
<p class="w3-opacity">Neurosurgeon</p>
<p>[email protected]</p>
<!-- <p><button class="w3-button w3-light-grey w3-block"><i class="fa fa-envelope"></i> Contact</button></p>-->
</div>
</div>
</div>
</div>
</div>
</div>
<!-- Download Section -->
<div class="w3-container" style="padding:128px 16px" id="download">
<h1 class="w3-center">Downloads</h1>
<p class="w3-center w3-large">Latest release (1.2.2)</p>
<div class="w3-row-padding w3-center" style="margin-top:64px">
<div class="w3-third">
<i class="fa fa-windows w3-margin-bottom w3-jumbo w3-center"></i>
<p class="w3-large">Windows</p>
<i><a href="https://github.com/raidionics/Raidionics/releases/download/v1.2.2/Raidionics-1.2.2-win.exe">Download for <strong>Windows</strong></a></i>
</div>
<div class="w3-third">
<i class="fa fa-apple w3-margin-bottom w3-jumbo"></i>
<p class="w3-large">macOS</p>
<i><a href="https://github.com/raidionics/Raidionics/releases/download/v1.2.2/Raidionics-1.2.2-macOS-x86_64.pkg">Download for <strong>macOS</strong></a></i> <br>
<i><a href="https://github.com/raidionics/Raidionics/releases/download/v1.2.2/Raidionics-1.2.2-macOS-arm64.pkg">Download for <strong>macOS ARM (M1 chip)</strong></a></i>
</div>
<div class="w3-third">
<i class="fa fa-linux w3-margin-bottom w3-jumbo"></i>
<p class="w3-large">Linux</p>
<i><a href="https://github.com/raidionics/Raidionics/releases/download/v1.2.2/Raidionics-1.2.2-ubuntu.deb">Download for <strong>Linux</strong></a></i>
</div>
</div>
<p class="fa fa-warning w3-left w3-large" style="color:red;"> Disclaimer: Raidionics has problems running on some specific CPU (cf. <a href="https://github.com/raidionics/Raidionics/wiki/Frequently-Asked-Questions-(FAQ)">FAQ</a>).</p>
</div>
<!-- Examples Section -->
<div class="w3-container w3-teal" style="padding:128px 16px" id="examples">
<h1 class="w3-center">Examples</h1>
<div class="w3-center" style="margin-top:64px">
<div class="w3-half">
<span class="w3-xlarge"><br> Stand-alone Raidionics </span>
<p class="raidionics"><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></p>
<p><a href="https://github.com/raidionics/Raidionics" class="w3-button w3-white w3-padding-large w3-large w3-opacity w3-hover-opacity-off">View on GitHub</a></p>
</div>
<div class="w3-half" style="padding-left: 20px">
<span class="w3-xlarge"><br> 3D Slicer plugin </span><br><br>
<p class="raidionics-slicer" ><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></p><br>
<p><a href="https://github.com/raidionics/Raidionics-Slicer" class="w3-button w3-white w3-padding-large w3-large w3-opacity w3-hover-opacity-off">View on GitHub</a></p>
</div>
</div>
</div>
<!-- Modal for full size images on click-->
<div id="modal01" class="w3-modal w3-black" onclick="this.style.display='none'">
<span class="w3-button w3-xxlarge w3-black w3-padding-large w3-display-topright" title="Close Modal Image">×</span>
<div class="w3-modal-content w3-animate-zoom w3-center w3-transparent w3-padding-64">
<img id="img01" class="w3-image">
<p id="caption" class="w3-opacity w3-large"></p>
</div>
</div>
<!-- Publications Section -->
<div class="w3-container" style="padding:128px 16px" id="publications">
<h1 class="w3-center">Publications</h1>
<h2 class="w3-center w3-large">Raidionics research</h2>
<div class="w3-container">
<p><a href="https://www.nature.com/articles/s41598-023-42048-7" class="w3-large"> * <i><b>Raidionics: an open software for pre- and postoperative central nervous system tumor segmentation and standardized reporting.</b></i> Bouget, D., Alsinan, D., Gaitan, V., Helland, R.H., Solheim, O., & Reinertsen, I. Nature Scientific Reports 13, 15570, 2023.</a></p>
<p><a href="https://www.frontiersin.org/articles/10.3389/fneur.2022.932219/full" class="w3-large"> * <i><b>Preoperative brain tumor imaging: models and software for segmentation and standardized reporting.</b></i> Bouget, D., Pedersen, A., Jakola, A. S., Kavouridis, V., Emblem, K. E., Eijgelaar, R. S., ... & Reinertsen, I. Frontiers in neurology, 1500, 2022.</a></p>
<p><a href="https://www.frontiersin.org/articles/10.3389/fradi.2021.711514/full" class="w3-large"> * <i><b>Meningioma segmentation in T1-weighted MRI leveraging global context and attention mechanisms.</b></i> Bouget, D., Pedersen, A., Hosainey, S. A. M., Solheim, O., & Reinertsen, I.. Frontiers in Radiology, 1, 711514, 2021.</a></p>
<p><a href="https://www.mdpi.com/2072-6694/13/18/4674" class="w3-large"> * <i><b>Glioblastoma surgery imaging–reporting and data system: Validation and performance of the automated segmentation task.</b></i> Bouget, D., Eijgelaar, R. S., Pedersen, A., Kommers, I., Ardon, H., Barkhof, F., ... & Solheim, O.. Cancers, 13(18), 4674, 2021.</a></p>
<p><a href="https://www.mdpi.com/2072-6694/13/12/2854" class="w3-large"> * <i><b>Glioblastoma surgery imaging—reporting and data system: Standardized reporting of tumor volume, location, and resectability based on automated segmentations.</b></i> Kommers, I., Bouget, D., Pedersen, A., Eijgelaar, R. S., Ardon, H., Barkhof, F., ... & De Witt Hamer, P. C.. Cancers, 13(12), 2854, 2021.</a></p>
<p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995198/" class="w3-large"> * <i><b>Fast meningioma segmentation in T1-weighted magnetic resonance imaging volumes using a lightweight 3D deep learning architecture.</b></i> Bouget, D., Pedersen, A., Hosainey, S. A. M., Vanel, J., Solheim, O., & Reinertsen, I. . Journal of Medical Imaging, 8(2), 024002-024002, 2021.</a></p>
</div>
<h2 class="w3-center w3-large">Related research</h2>
<div class="w3-container">
<p><a href="https://link.springer.com/article/10.1007/s00701-022-05126-9" class="w3-large"> * <i><b>Pretreatment patient-reported cognitive function in patients with diffuse glioma.</b></i> Schei, S., Solheim, O., Salvesen, Ø., Hjermstad, M. J., Bouget, D., & Sagberg, L. M.. Acta Neurochirurgica, 164(3), 703-711, 2022.</a></p>
</div>
</div>
<!-- Contact Section -->
<div class="w3-container w3-blue-gray" style="padding:128px 16px" id="contact">
<h3 class="w3-center">CONTACT</h3>
<p class="w3-center w3-large">Lets get in touch. Feel free to contact us for collaboration or data sharing.</p>
<div style="margin-top:48px">
<p><i class="fa fa-map-marker fa-fw w3-xxlarge w3-margin-right"></i> Trondheim, Norway</p>
<p><i class="fa fa-envelope fa-fw w3-xxlarge w3-margin-right"> </i> Email: [email protected]</p>
<p><i class="fa fa-github fa-fw w3-xxlarge w3-margin-right"> </i> <a href="https://github.com/raidionics">https://github.com/raidionics</a></p>
<p><i class="fa fa-exclamation fa-fw w3-xxlarge w3-margin-right"> </i> <a href="https://github.com/raidionics/Raidionics/issues">Report issues or request features</a></p>
<br>
</div>
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