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pyproject.toml
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pyproject.toml
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[project]
name = "pyfixest"
description = "Fast high dimensional fixed effect estimation following syntax of the fixest R package."
requires-python = ">= 3.9"
version = "0.27.0"
authors = [
{ name = "Alexander Fischer", email = "[email protected]" },
{ name = "Styfen Schär" },
]
readme = "README.md"
license = { text = "MIT" }
dependencies = [
"lets-plot>=4.0.0",
"scipy>=1.6",
"formulaic>=1.0.0",
"pandas>=1.1.0",
"numba>=0.58.0",
"seaborn>=0.13.2",
"tabulate>=0.9.0",
"tqdm>=4.0.0",
"great-tables>=0.10.0",
"numpy>=1.19.0",
"narwhals>=1.13.3",
"joblib>=1.4.2,<2",
]
[tool.pixi.feature.dev.dependencies]
rpy2 = ">=3.5.11,<4"
[project.optional-dependencies]
dev = [
"pytest>=7.2.0",
"pytest-cov>=4.1.0",
"pytest-xdist>=3.5.0",
"pyhdfe>=0.2.0",
"pre-commit==3.6.0",
"doubleml==0.7.1",
"wildboottest>=0.3.2",
"ipykernel>=6.29.5,<7",
"duckdb>=1.1.3",
"polars>=1.0.0",
"pyarrow>=14.0",
]
docs = [
"quartodoc>=0.7.2",
"jupyterlab>=4.0.12",
"jupytext==1.16.1",
"watermark==2.4.3",
"wildboottest>=0.3.2",
"causaldata>=0.1.4,<0.2",
"pylatex>=1.4.2,<2",
"marginaleffects>=0.0.10",
]
[tool.pixi.feature.build.dependencies]
python-build = ">=1.2.2,<2"
[build-system]
build-backend = "hatchling.build"
requires = ["hatchling"]
[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["linux-64", "win-64", "osx-arm64", "osx-64"]
[tool.pixi.pypi-dependencies]
pyfixest = { path = ".", editable = true }
[tool.pixi.environments]
default = { solve-group = "default" }
dev = { features = ["dev"], solve-group = "default" }
docs = { features = ["docs"], solve-group = "default" }
build = { features = ["build"], solve-group = "default" }
[tool.pixi.feature.dev.tasks]
tests = "pytest -n 4 --cov-report=term tests"
tests-regular = "pytest tests -n 4 -m \"not (extended or slow or plots)\" --cov=pyfixest --cov-report=xml"
tests-extended = "pytest tests -n 4 -m \"tests-extended\" --cov=pyfixest --cov-report=xml"
tests-slow = "pytest tests -n 4 -m slow --cov=./ --cov-report=xml"
tests-rerun = "pytest --lf -n 4"
debug = "python pyfixest/debug.py"
lint = "pre-commit run ruff --all-files"
update-test-data = "Rscript tests/r_test_comparisons.R"
install-r = "Rscript r_test_requirements.R"
render-notebooks = "python scripts/run_notebooks.py"
[tool.pixi.feature.build.tasks]
build-pip = 'python -m build .'
[tool.pixi.feature.docs.tasks]
docs-build = "quartodoc build --verbose --config docs/_quarto.yml"
docs-render = "quarto render docs"
docs-preview = "quarto preview docs"
[tool.pixi.feature.docs.dependencies]
rpy2 = ">=3.5.11,<4"
r-fixest = ">=0.12.1,<0.13"
r-broom = ">=1.0.5,<2"
[tool.pytest.ini_options]
addopts = [
"-v",
"--strict-markers",
"--strict-config",
"--cov=pyfixest",
"--cov-report=term-missing",
"--color=yes",
]
markers = [
"slow: mark test to be part of the slow test suite",
"extended: mark test to be part of the extended test suite",
"plots: marks all tests for plotting functionality, tests only triggered when using tag in github issue",
]
filterwarnings = [
"ignore::FutureWarning:rpy2",
"ignore::DeprecationWarning:rpy2",
]
[tool.ruff]
line-length = 88
fix = true
# Assume Python 3.9
target-version = "py39"
[tool.ruff.lint]
# docs: https://docs.astral.sh/ruff/rules/
select = [
"B", # bugbear
"F", # Pyflakes
"E", # pycodestyle errors
"W", # pycodestyle warnings
"I", # isort
"D", # flake8-docstrings
"UP", # pyupgrade
"SIM", # flake8-simplify
"RUF", # ruff,
"TRY", # tryceratops
]
ignore = [
# do not enable if formatting
# docs: https://docs.astral.sh/ruff/formatter/#conflicting-lint-rules
"B028", # No explicit `stacklevel` keyword argument found
"B904", # Better exception handling
"W191", # tab indentation
"E111", # indentation
"E114", # indentation
"E117", # over indented
"D206", # indent with spaces
"D300", # triple single quotes
"E501", # line length regulated by formatter
"D105", # missing docstring in magic method
"D100", # missing docstring in public module
"D104", # missing docstring in public package
"SIM110", # Use all instead of `for` loop
"TRY003", # Avoid specifying long messages outside the exception class
"D205", # 1 blank line required between summary line and description
"W505", # Doc line too long
]
[tool.ruff.lint.per-file-ignores]
"tests/**/*.py" = ["D100", "D103"]
"pyfixest/multcomp.py" = ["D103"]
"pyfixest/summarize.py" = ["D103"]
"pyfixest/visualize.py" = ["D103"]
"scripts/*.py" = ["D103"]
[tool.ruff.lint.pycodestyle]
max-doc-length = 88
[tool.ruff.lint.pydocstyle]
convention = "numpy"
[tool.ruff.format]
docstring-code-format = true
docstring-code-line-length = 88
[tool.mypy]
plugins = "numpy.typing.mypy_plugin"
[[tool.mypy.overrides]]
module = [
"pandas.*",
"numpy.*",
"scipy.*",
"numba.*",
"lets_plot.*",
"formulaic.*",
"wildboottest.*",
"tabulate.*",
"joblib.*",
"narwhals.*",
"tqdm.*",
]
ignore_missing_imports = true