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offlineQA: error when loading hdr/img file #17

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ppxma7 opened this issue May 22, 2019 · 3 comments
Open

offlineQA: error when loading hdr/img file #17

ppxma7 opened this issue May 22, 2019 · 3 comments

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@ppxma7
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ppxma7 commented May 22, 2019

MRIread struggling to get the correct bits out of the header file, of a nifti pair. Added the red for clarity
Screenshot 2019-05-22 at 12 27 44

@ppxma7
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ppxma7 commented May 22, 2019

tmp is a struct containing tmp.base which looks like:
Screenshot 2019-05-22 at 12 30 21

@julienbesle
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Hi Michael,

I think this could be a path problem. I checked setInitialParams.m in offlineQA on github and there is no call to MRIread at line 11.
Do you have another function called setInitialParams.m that shadows the correct setInitialParams.m in offlineQA?

You can try:
which setInitialParams all

@ppxma7
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ppxma7 commented Feb 27, 2020

I will check this. I believe I perhaps was trying it on Kevin's freesurfer branch hence the error as he is using more general image reading functions, rather than relying on mrTools

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