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pyproject.toml
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pyproject.toml
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[project]
name = "ethology"
authors = [{ name = "Adam Tyson", email = "[email protected]" }]
description = "Data processing tools for animal behavioural analysis"
readme = "README.md"
requires-python = ">=3.10.0"
dynamic = ["version"]
license = { text = "BSD-3-Clause" }
classifiers = [
"Development Status :: 2 - Pre-Alpha",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: OS Independent",
"License :: OSI Approved :: BSD License",
]
dependencies = [
"movement",
]
[project.urls]
"Homepage" = "https://github.com/neuroinformatics-unit/ethology"
"Bug Tracker" = "https://github.com/neuroinformatics-unit/ethology/issues"
"Documentation" = "https://github.com/neuroinformatics-unit/ethology"
"Source Code" = "https://github.com/neuroinformatics-unit/ethology"
"User Support" = "https://github.com/neuroinformatics-unit/ethology/issues"
[project.optional-dependencies]
dev = [
"pytest",
"pytest-cov",
"coverage",
"tox",
"mypy",
"pre-commit",
"ruff",
"codespell",
"setuptools_scm",
"pandas-stubs",
"types-attrs",
"check-manifest",
"types-PyYAML",
"types-requests",
]
# [project.scripts]
# movement = "movement.cli_entrypoint:main"
[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"
[tool.setuptools]
include-package-data = true
[tool.setuptools.packages.find]
include = ["ethology*"]
exclude = ["tests*"]
[tool.pytest.ini_options]
addopts = "--cov=ethology"
[tool.setuptools_scm]
[tool.check-manifest]
ignore = [
".yaml",
"tox.ini",
"tests/",
"tests/test_unit/",
"tests/test_integration/",
]
[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs"]
fix = true
[tool.ruff.lint]
# See https://docs.astral.sh/ruff/rules/
ignore = [
"D203", # one blank line before class
"D213", # multi-line-summary second line
]
select = [
"E", # pycodestyle errors
"F", # Pyflakes
"UP", # pyupgrade
"I", # isort
"B", # flake8 bugbear
"SIM", # flake8 simplify
"C90", # McCabe complexity
"D", # pydocstyle
"NPY201", # checks for syntax that was deprecated in numpy2.0
]
per-file-ignores = { "tests/*" = [
"D100", # missing docstring in public module
"D205", # missing blank line between summary and description
"D103", # missing docstring in public function
], "examples/*" = [
"B018", # Found useless expression
"D103", # Missing docstring in public function
"D400", # first line should end with a period.
"D415", # first line should end with a period, question mark...
"D205", # missing blank line between summary and description
] }
[tool.ruff.format]
docstring-code-format = true # Also format code in docstrings
[tool.codespell]
skip = '.git,.tox'
check-hidden = true
[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{310,311,312}
isolated_build = True
[gh-actions]
python =
3.10: py310
3.11: py311
3.12: py312
[testenv]
extras =
dev
commands =
pytest -v --color=yes --cov=ethology --cov-report=xml
"""