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Connect to formal workflows #4

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k8hertweck opened this issue Feb 19, 2021 · 0 comments
Open

Connect to formal workflows #4

k8hertweck opened this issue Feb 19, 2021 · 0 comments

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@k8hertweck
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This course uses code to explore RNAseq analysis. It will certainly require working on the command line, probably interactively via gizmo.

Do we also mention:

  • creating shell scripts? (into unix)
  • batch jobs with slurm? (hpc: on-prem)
  • workflow creation? if so, which? (hpc: cloud, or nextflow-specific course?)

We could also leave these to other classes.

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