Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Feature] Benchmark napari versus brainmapper code #391

Open
alessandrofelder opened this issue Feb 27, 2024 · 0 comments
Open

[Feature] Benchmark napari versus brainmapper code #391

alessandrofelder opened this issue Feb 27, 2024 · 0 comments
Labels
enhancement New feature or request

Comments

@alessandrofelder
Copy link
Member

Is your feature request related to a problem? Please describe.
A user reports that running cellfinder through napari takes 2 days on their machine, but only 1 day through the brainmapper CLI. We should run some tests to see whether we can reproduce, and if so, get to the bottom of it and write a benchmark for this.

Could be related to reading arrays with dask versus numpy.

Describe the solution you'd like
Napari and brainmapper cell finding speeds should be approx. the same.

@alessandrofelder alessandrofelder added the enhancement New feature or request label Feb 27, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant