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pyproject.toml
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pyproject.toml
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[project]
name = "brainrender"
authors = [
{ name = "Federico Claudi, Adam Tyson, Luigi Petrucco", email = "[email protected]" },
]
description = "Visualisation and exploration of brain atlases and other anatomical data"
readme = "README.md"
requires-python = ">=3.10"
dynamic = ["version"]
dependencies = [
"brainglobe-atlasapi>=2.0.1",
"brainglobe-space>=1.0.0",
"brainglobe-utils>=0.5.0",
"h5py",
"k3d",
"loguru",
"morphapi>=0.2.1",
"msgpack",
"myterial",
"numpy",
"pandas",
"pooch",
"pyinspect>=0.0.8",
"pyyaml>=5.3",
"requests",
"tables",
"vedo>=2024.5.2",
"vtk<9.4.0"
]
license = { text = "BSD-3-Clause" }
classifiers = [
"Development Status :: 3 - Alpha",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: OS Independent",
"License :: OSI Approved :: BSD License",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
]
[project.urls]
Homepage = "https://brainglobe.info/"
"Source Code" = "https://github.com/brainglobe/brainrender"
"Bug Tracker" = "https://github.com/brainglobe/brainrender/issues"
Documentation = "https://brainglobe.info/documentation/brainrender/index.html"
"User Support" = "https://forum.image.sc/tag/brainglobe"
[project.optional-dependencies]
dev = [
"pytest",
"pytest-cov",
"coverage",
"tox",
"black",
"mypy",
"pre-commit",
"ruff",
"setuptools_scm",
]
nb = ["jupyter", "k3d"]
[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"
[tool.setuptools]
include-package-data = true
[tool.setuptools.packages.find]
include = ["brainrender*"]
exclude = ["tests*", "docs*", "examples*", "imgs*"]
[tool.pytest.ini_options]
addopts = "--cov=brainrender"
markers = [
"slow: marks tests as slow (deselect with '-m \"not slow\"')",
"local: marks test as local (not for CI)",
]
[tool.black]
target-version = ['py310','py311', 'py312']
skip-string-normalization = false
line-length = 79
[tool.setuptools_scm]
[tool.check-manifest]
ignore = [
".yaml",
"tox.ini",
"tests/",
"tests/test_unit/",
"tests/test_integration/",
"docs/",
"docs/source/",
]
# should revisit some of these.
[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs", "examples"]
fix = true
ignore = ["E501", "E402"]
[tool.ruff.lint]
select = ["I", "E", "F"]
[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{310,311,312}
isolated_build = True
[gh-actions]
python =
3.10: py310
3.11: py311
3.12: py312
[testenv]
extras =
dev
commands =
pytest -v --color=yes --cov=brainrender --cov-report=xml
passenv =
CI
GITHUB_ACTIONS
DISPLAY
XAUTHORITY
NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
PYVISTA_OFF_SCREEN
"""