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Some napari plugin output data should be loaded as napari layers #156

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adamltyson opened this issue Jul 5, 2021 · 5 comments
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enhancement New feature or request napari-plugin

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@adamltyson
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@stephenlenzi
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this should be implemented now

@adamltyson
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We probably don't want all the data being loaded. Some things like the deformation field aren't that informative, and for some high-res atlases, this will use loads of RAM.

What do you think about saving the data as normal, but displaying the results (maybe registered atlas, boundaries and hemispheres) rescaled & reoriented to overlay on the raw data (like in the brainglobe-napari-io cellfinder data loader)?

@stephenlenzi
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selective loading is done, rescaling to raw data is a great idea, i'll implement that too

@stephenlenzi
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rescaling is implemented, but currently loads from disk and would be nicer if returned from brainreg and displayed instead

@adamltyson
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Keeping this open, as fine for now, but there's a discussion to be had about exactly what gets displayed vs saved.

@alessandrofelder alessandrofelder transferred this issue from brainglobe/brainreg-napari Nov 6, 2023
@adamltyson adamltyson changed the title Some output data should be loaded as napari layers Some napari plugin output data should be loaded as napari layers Nov 24, 2023
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enhancement New feature or request napari-plugin
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