jmespath: 500 error

[colleenXu]

I get 500 errors when trying to use jmespath for the following queries.

MyChem Query for specific chembl.drug_mechanism gene, trying to keep only matching chembl.drug_mechanism info

GET version

POST version:

curl --location --globoff 'https://mychem.info/v1/query?size=1000&fields=chembl.molecule_chembl_id,chembl.drug_mechanisms&jmespath=chembl.drug_mechanisms.target_components|[?uniprot=='Q16602']' \
--header 'Content-Type: application/json' \
--data '{
  "q": ["Q16602"],
  "scopes": ["chembl.drug_mechanisms.target_components.uniprot"]
}'

Query for specific civic.evidence_items.disease, trying to keep only matching civic.evidence_items info

GET version

POST version:

curl --location --globoff 'https://myvariant.info/v1/query?size=1000&fields=civic.entrez_id,civic.evidence_items&jmespath=civic.evidence_items.disease|[?doid=='DOID:9256']' \
--header 'Content-Type: application/json' \
--data '{
    "q": "DOID:9256",
    "scopes": "civic.evidence_items.disease.doid"
}'

My guess is that this error has to do with how these fields are nested (two layers with arrays of objects?)

[colleenXu]

Assigning to myself to review and see if this is fixed.

[colleenXu]

https://suwulab.slack.com/archives/CC19LHAF2/p1713395408672619?thread_ts=1712700743.634569&cid=CC19LHAF2