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manual_tt_ui.py
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manual_tt_ui.py
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# -*- coding: utf-8 -*-
"""
Copyright 2017 Bernard Giroux, Elie Dumas-Lefebvre, Jerome Simon
email: [email protected]
This file is part of BhTomoPy.
BhTomoPy is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
import sys
from PyQt5 import QtGui, QtWidgets, QtCore
import matplotlib as mpl
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg, NavigationToolbar2QT
import numpy as np
from sqlalchemy.orm.attributes import flag_modified
from utils_ui import chooseMOG
import database
current_module = sys.modules[__name__]
database.create_data_management(current_module)
class ManualttUI(QtWidgets.QFrame):
KeyPressed = QtCore.pyqtSignal()
def __init__(self, parent=None):
super(ManualttUI, self).__init__()
self.setWindowTitle("BhTomoPy/Manual Traveltime Picking")
self.mog = None
self.initUI()
# Signals of communication between Upper and Lower Figures
self.upperFig.UpperTracePickedSignal.connect(self.lowerFig.plot_trace_data)
self.upperFig.UpperTracePickedSignal.connect(self.update_control_center)
self.lowerFig.LowerTracePickedSignal.connect(self.upperFig.plot_amplitude)
self.lowerFig.LowerTracePickedSignal.connect(self.update_control_center)
def next_trace(self):
n = int(self.Tnum_Edit.text())
n += 1
if self.main_data_radio.isChecked():
self.mog.tt_done[n - 2] = 1
elif self.t0_before_radio.isChecked():
self.mog.av.tt_done[n - 2] = 1
elif self.t0_after_radio.isChecked():
self.mog.ap.tt_done[n - 2] = 1
self.Tnum_Edit.setText(str(n))
self.update_control_center()
def prev_trace(self):
n = int(self.Tnum_Edit.text())
n -= 1
self.Tnum_Edit.setText(str(n))
self.update_control_center()
def update_control_center(self):
n = int(self.Tnum_Edit.text()) - 1
# ind = self.openmain.mog_combo.currentIndex()
# self.mog = self.mogs[ind]
if self.mog is None:
return
# if len(self.mogs) == 0:
# return
# else:
if self.main_data_radio.isChecked():
done = np.round(len(self.mog.tt[self.mog.tt != -1]) / len(self.mog.tt) * 100)
self.xRx_label.setText(str(self.mog.data.Rx_x[n]))
self.xTx_label.setText(str(self.mog.data.Tx_x[n]))
self.yRx_label.setText(str(self.mog.data.Rx_y[n]))
self.yTx_label.setText(str(self.mog.data.Tx_y[n]))
self.zRx_label.setText(str(np.round(self.mog.data.Rx_z[n], 3)))
self.zTx_label.setText(str(self.mog.data.Tx_z[n]))
self.ntrace_label.setText(str(self.mog.data.ntrace))
self.percent_done_label.setText(str(done))
self.time.setText(str(np.round(self.mog.tt[n], 4)))
self.incertitude_value_label.setText(str(np.round(self.mog.et[n], 4)))
if self.t0_before_radio.isChecked():
airshot_before = self.mog.av
done = np.round(len(airshot_before.tt[airshot_before.tt != -1]) / len(airshot_before.tt) * 100)
self.xRx_label.setText(str(airshot_before.data.Rx_x[n]))
self.xTx_label.setText(str(airshot_before.data.Tx_x[n]))
self.yRx_label.setText(str(airshot_before.data.Rx_y[n]))
self.yTx_label.setText(str(airshot_before.data.Tx_y[n]))
self.zRx_label.setText(str(np.round(airshot_before.data.Rx_z[n], 3)))
self.zTx_label.setText(str(airshot_before.data.Tx_z[n]))
self.ntrace_label.setText(str(airshot_before.data.ntrace))
self.percent_done_label.setText(str(done))
self.time.setText(str(np.round(airshot_before.tt[n], 4)))
self.incertitude_value_label.setText(str(np.round(airshot_before.et[n], 4)))
if self.t0_after_radio.isChecked():
airshot_after = self.mog.ap
done = np.round(len(airshot_after.tt[airshot_after.tt != -1]) / len(airshot_after.tt) * 100)
self.xRx_label.setText(str(airshot_after.data.Rx_x[n]))
self.xTx_label.setText(str(airshot_after.data.Tx_x[n]))
self.yRx_label.setText(str(airshot_after.data.Rx_y[n]))
self.yTx_label.setText(str(airshot_after.data.Tx_y[n]))
self.zRx_label.setText(str(np.round(airshot_after.data.Rx_z[n], 3)))
self.zTx_label.setText(str(airshot_after.data.Tx_z[n]))
self.ntrace_label.setText(str(airshot_after.data.ntrace))
self.percent_done_label.setText(str(done))
self.time.setText(str(np.round(airshot_after.tt[n], 4)))
self.incertitude_value_label.setText(str(np.round(airshot_after.et[n], 4)))
# self.check_save() TODO ?
self.update_a_and_t_edits()
self.upperFig.plot_amplitude()
self.lowerFig.plot_trace_data()
def update_a_and_t_edits(self):
n = int(self.Tnum_Edit.text())
# ind = self.openmain.mog_combo.currentIndex()
# mog = self.mogs[ind]
if self.lim_checkbox.isChecked():
A_max = max(self.mog.data.rdata[:, n].flatten())
A_min = min(self.mog.data.rdata[:, n].flatten())
self.A_min_Edit.setText(str(A_min))
self.A_max_Edit.setText(str(A_max))
# else:
# self.A_min_Edit.setText(str(-1000))
# self.A_max_Edit.setText(str(1000))
# self.t_min_Edit.setText(str(0))
# self.t_max_Edit.setText(str(int(np.round(self.mog.data.timestp[-1]))))
def reinit_trace(self):
n = int(self.Tnum_Edit.text()) - 1
if self.main_data_radio.isChecked():
self.mog.tt[n] = -1.0
self.mog.et[n] = -1.0
self.mog.tt_done[n] = -1.0
if self.t0_before_radio.isChecked():
self.mog.av.tt[n] = -1.0
self.mog.av.et[n] = -1.0
self.mog.av.tt_done[n] = -1.0
if self.t0_after_radio.isChecked():
self.mog.ap.tt[n] = -1.0
self.mog.ap.et[n] = -1.0
self.mog.ap.tt_done[n] = -1.0
self.update_control_center()
def next_trace_to_pick(self):
ind = np.where(self.mog.tt_done == 0)[0]
to_pick = ind[0] + 1
self.Tnum_Edit.setText(str(to_pick))
self.update_control_center()
def reinit_tnum(self):
self.Tnum_Edit.setText('1')
def plot_stats(self):
# ind = self.openmain.mog_combo.currentIndex()
# mog = self.mogs[ind]
self.statsFig1 = StatsFig1()
self.statsFig1.plot_stats(self.mog)
self.statsFig1.showMaximized()
def savefile(self):
flag_modified(self.mog, 'tt')
flag_modified(self.mog, 'et')
flag_modified(self.mog, 'tt_done')
if self.mog.useAirShots:
flag_modified(self.mog.av, 'tt')
flag_modified(self.mog.av, 'et')
flag_modified(self.mog.av, 'tt_done')
flag_modified(self.mog.ap, 'tt')
flag_modified(self.mog.ap, 'et')
flag_modified(self.mog.ap, 'tt_done')
current_module.session.commit()
# if self.mog.useAirShots == 1: # TODO: verify implementation with sqlalchemy
# sfile['air'] = self.air
QtWidgets.QMessageBox.information(self, 'Success', "Database was saved successfully",
buttons=QtWidgets.QMessageBox.Ok)
def openfile(self):
item = chooseMOG(current_module, database.long_url(current_module))
if item is not None:
self.mog = item
if self.mog.useAirShots == True:
self.t0_before_radio.setEnabled(True)
self.t0_after_radio.setEnabled(True)
else:
self.t0_before_radio.setEnabled(False)
self.t0_after_radio.setEnabled(False)
self.update_control_center()
def import_tt_file(self):
filename = QtWidgets.QFileDialog.getOpenFileName(self, 'Import')[0]
self.load_tt_file(filename)
def load_tt_file(self, filename):
try:
warning = QtWidgets.QMessageBox(QtWidgets.QMessageBox.Warning, 'Warning', "This will reinitialize all previous picks. Proceed?")
warning.addButton(QtWidgets.QMessageBox.Yes)
warning.addButton(QtWidgets.QMessageBox.No)
warning.setDefaultButton(QtWidgets.QMessageBox.No)
if warning.exec_() == QtWidgets.QMessageBox.Yes:
info_tt = np.loadtxt(filename)
self.mog.tt_done[:] = 0
self.mog.tt[:] = -1
self.mog.et[:] = -1
for row in info_tt:
trc_number = int(float(row[0])+0.00000001)
tt = float(row[1])
et = float(row[2])
self.mog.tt_done[trc_number - 1] = 1
self.mog.tt[trc_number - 1] = tt
self.mog.et[trc_number - 1] = et
self.update_control_center()
except:
QtWidgets.QMessageBox.warning(self, 'Warning', "Could not import {} file".format(filename), buttons=QtWidgets.QMessageBox.Ok)
def initUI(self):
blue_palette = QtGui.QPalette()
blue_palette.setColor(QtGui.QPalette.Foreground, QtCore.Qt.darkCyan)
# ------ Creation of the Manager for the Upper figure ------- #
self.upperFig = UpperFig(self)
self.uppertool = NavigationToolbar2QT(self.upperFig, self)
self.uppermanager = QtWidgets.QWidget()
uppermanagergrid = QtWidgets.QGridLayout()
uppermanagergrid.addWidget(self.uppertool, 0, 0)
uppermanagergrid.addWidget(self.upperFig, 1, 0)
uppermanagergrid.setContentsMargins(0, 0, 0, 0)
uppermanagergrid.setVerticalSpacing(3)
self.uppermanager.setLayout(uppermanagergrid)
# ------ Creation of the Manager for the Lower figure ------- #
self.lowerFig = LowerFig(self)
self.lowermanager = QtWidgets.QWidget()
lowermanagergrid = QtWidgets.QGridLayout()
lowermanagergrid.addWidget(self.lowerFig, 0, 0)
lowermanagergrid.setContentsMargins(0, 0, 0, 0)
self.lowermanager.setLayout(lowermanagergrid)
# ------- Widgets Creation ------- #
# --- Buttons --- #
btn_Prev = QtWidgets.QPushButton("Previous Trace")
btn_Next = QtWidgets.QPushButton("Next Trace")
btn_Next_Pick = QtWidgets.QPushButton("Next Trace to Pick")
btn_Reini = QtWidgets.QPushButton("Reinitialize Trace")
btn_Upper = QtWidgets.QPushButton("Activate Picking - Upper Trace")
btn_Conti = QtWidgets.QPushButton("Activate Picking - Shot Gather")
btn_Stats = QtWidgets.QPushButton("Statistics")
# - Buttons' Actions - #
btn_Next.clicked.connect(self.next_trace)
btn_Prev.clicked.connect(self.prev_trace)
btn_Upper.clicked.connect(self.upper_trace_isClicked)
btn_Conti.clicked.connect(self.lower_trace_isClicked)
btn_Stats.clicked.connect(self.plot_stats)
btn_Reini.clicked.connect(self.reinit_trace)
btn_Next_Pick.clicked.connect(self.next_trace_to_pick)
# --- Label --- #
trc_Label = MyQLabel("Trace number :", ha='right')
t_min_label = MyQLabel("t min", ha='center')
t_max_label = MyQLabel("t max", ha='center')
A_min_label = MyQLabel("A min", ha='center')
A_max_label = MyQLabel("A max", ha='center')
position_label = MyQLabel(("Position Tx--Rx"), ha='center')
x_label = MyQLabel("x", ha='center')
y_label = MyQLabel("y", ha='center')
z_label = MyQLabel("z", ha='center')
Tx_label = MyQLabel("Tx:", ha='right')
Rx_label = MyQLabel("Rx:", ha='right')
done_label = MyQLabel('% Done', ha='left')
self.xTx_label = MyQLabel("", ha='right')
self.yTx_label = MyQLabel("", ha='right')
self.zTx_label = MyQLabel("", ha='right')
self.xRx_label = MyQLabel("", ha='right')
self.yRx_label = MyQLabel("", ha='right')
self.zRx_label = MyQLabel("", ha='right')
self.ntrace_label = MyQLabel("", ha='right')
self.percent_done_label = MyQLabel('', ha='right')
trace_label = MyQLabel("traces", ha='left')
picked_label = MyQLabel("Picked Time:", ha='right')
self.time = QtWidgets.QLabel("")
incertitude_label = QtWidgets.QLabel("±")
self.incertitude_value_label = QtWidgets.QLabel("")
# --- Setting Labels color --- #
picked_label.setPalette(blue_palette)
self.time.setPalette(blue_palette)
incertitude_label.setPalette(blue_palette)
self.incertitude_value_label.setPalette(blue_palette)
# --- Actions --- #
openAction = QtWidgets.QAction('Open main data file', self)
openAction.setShortcut('Ctrl+O')
# openAction.triggered.connect(self.openmain.show)
openAction.triggered.connect(self.openfile)
saveAction = QtWidgets.QAction('Save', self)
saveAction.setShortcut('Ctrl+S')
saveAction.triggered.connect(self.savefile)
importAction = QtWidgets.QAction('Import ...', self)
importAction.triggered.connect(self.import_tt_file)
# --- ToolBar --- #
self.tool = QtWidgets.QMenuBar()
filemenu = self.tool.addMenu('&File')
filemenu.addAction(openAction)
filemenu.addAction(saveAction)
filemenu.addAction(importAction)
# --- Edits --- #
self.Tnum_Edit = QtWidgets.QLineEdit('1')
self.t_min_Edit = QtWidgets.QLineEdit('0')
self.t_max_Edit = QtWidgets.QLineEdit('300')
self.A_min_Edit = QtWidgets.QLineEdit('-1000')
self.A_max_Edit = QtWidgets.QLineEdit('1000')
# - Edits' Disposition - #
self.Tnum_Edit.setFixedWidth(100)
self.Tnum_Edit.setAlignment(QtCore.Qt.AlignHCenter)
self.t_min_Edit.setFixedWidth(50)
self.t_min_Edit.setAlignment(QtCore.Qt.AlignHCenter)
self.t_max_Edit.setFixedWidth(50)
self.t_max_Edit.setAlignment(QtCore.Qt.AlignHCenter)
self.A_min_Edit.setFixedWidth(50)
self.A_min_Edit.setAlignment(QtCore.Qt.AlignHCenter)
self.A_max_Edit.setFixedWidth(50)
self.A_max_Edit.setAlignment(QtCore.Qt.AlignHCenter)
# - Edits' Actions - #
self.Tnum_Edit.editingFinished.connect(self.update_control_center)
self.t_min_Edit.editingFinished.connect(self.upperFig.plot_amplitude)
self.t_max_Edit.editingFinished.connect(self.upperFig.plot_amplitude)
self.A_min_Edit.editingFinished.connect(self.upperFig.plot_amplitude)
self.A_max_Edit.editingFinished.connect(self.upperFig.plot_amplitude)
# --- Checkboxes --- #
self.Wave_checkbox = QtWidgets.QCheckBox("Wavelet tranf. denoising")
self.veloc_checkbox = QtWidgets.QCheckBox("Show apparent velocity")
self.lim_checkbox = QtWidgets.QCheckBox("Dynamic amplitude limits")
self.save_checkbox = QtWidgets.QCheckBox("Intermediate saves")
self.jump_checkbox = QtWidgets.QCheckBox("Jump to next unpicked Trace")
self.pick_checkbox = QtWidgets.QCheckBox("Pick Tx Data")
self.pick_checkbox.setDisabled(True)
# - CheckBoxes' Actions - #
self.lim_checkbox.stateChanged.connect(self.update_a_and_t_edits)
self.lim_checkbox.stateChanged.connect(self.upperFig.plot_amplitude)
self.veloc_checkbox.stateChanged.connect(self.update_control_center)
# --- Radio Buttons --- #
self.main_data_radio = QtWidgets.QRadioButton("Main Data file")
self.t0_before_radio = QtWidgets.QRadioButton("t0 Before")
self.t0_after_radio = QtWidgets.QRadioButton("t0 After")
self.tt_picking_radio = QtWidgets.QRadioButton("Traveltime picking")
self.trace_selec_radio = QtWidgets.QRadioButton("Trace selection")
# - Radio Buttons' Disposition - #
self.main_data_radio.setChecked(True)
# self.t0_before_radio.setChecked(True)
self.tt_picking_radio.setChecked(True)
# - Radio Buttons' Actions - #
self.main_data_radio.toggled.connect(self.reinit_tnum)
self.t0_before_radio.toggled.connect(self.reinit_tnum)
self.t0_after_radio.toggled.connect(self.reinit_tnum)
self.main_data_radio.toggled.connect(self.update_control_center)
self.t0_before_radio.toggled.connect(self.update_control_center)
self.t0_after_radio.toggled.connect(self.update_control_center)
# --- Text Edits --- #
info_Tedit = QtWidgets.QTextEdit()
info_Tedit.setReadOnly(True)
PTime_Tedit = QtWidgets.QTextEdit()
PTime_Tedit.setReadOnly(True)
# --- combobox --- #
self.pick_combo = QtWidgets.QComboBox()
self.pick_combo.addItem("Pick with std deviation")
self.pick_combo.addItem("Simple Picking")
# ------- subWidgets ------- #
# --- Info Subwidget --- #
Sub_Info_widget = QtWidgets.QWidget()
Sub_Info_grid = QtWidgets.QGridLayout()
Sub_Info_grid.addWidget(position_label, 0, 1, 1, 3)
Sub_Info_grid.addWidget(x_label, 2, 1)
Sub_Info_grid.addWidget(y_label, 2, 2)
Sub_Info_grid.addWidget(z_label, 2, 3)
Sub_Info_grid.addWidget(Tx_label, 3, 0)
Sub_Info_grid.addWidget(self.xTx_label, 3, 1)
Sub_Info_grid.addWidget(self.yTx_label, 3, 2)
Sub_Info_grid.addWidget(self.zTx_label, 3, 3)
Sub_Info_grid.addWidget(Rx_label, 4, 0)
Sub_Info_grid.addWidget(self.xRx_label, 4, 1)
Sub_Info_grid.addWidget(self.yRx_label, 4, 2)
Sub_Info_grid.addWidget(self.zRx_label, 4, 3)
Sub_Info_grid.addWidget(self.ntrace_label, 5, 1)
Sub_Info_grid.addWidget(trace_label, 5, 2)
Sub_Info_grid.addWidget(done_label, 6, 2)
Sub_Info_grid.addWidget(self.percent_done_label, 6, 1)
Sub_Info_widget.setLayout(Sub_Info_grid)
Sub_Info_widget.setStyleSheet("background: white")
# --- Picked Time SubWidget --- #
Sub_picked_widget = QtWidgets.QWidget()
Sub_picked_grid = QtWidgets.QGridLayout()
Sub_picked_grid.addWidget(picked_label, 0, 0)
Sub_picked_grid.addWidget(self.time, 0, 1)
Sub_picked_grid.addWidget(incertitude_label, 0, 2)
Sub_picked_grid.addWidget(self.incertitude_value_label, 0, 3)
Sub_picked_widget.setLayout(Sub_picked_grid)
Sub_picked_widget.setStyleSheet(" Background: white ")
# --- Trace Subwidget --- #
Sub_Trace_Widget = QtWidgets.QWidget()
Sub_Trace_Grid = QtWidgets.QGridLayout()
Sub_Trace_Grid.addWidget(trc_Label, 0, 0)
Sub_Trace_Grid.addWidget(self.Tnum_Edit, 0, 1)
Sub_Trace_Grid.setContentsMargins(0, 0, 0, 0)
Sub_Trace_Widget.setLayout(Sub_Trace_Grid)
# --- Prev Next SubWidget --- #
sub_prev_next_widget = QtWidgets.QWidget()
sub_prev_next_grid = QtWidgets.QGridLayout()
sub_prev_next_grid.addWidget(btn_Prev, 0, 0)
sub_prev_next_grid.addWidget(btn_Next, 0, 1)
sub_prev_next_grid.setContentsMargins(0, 0, 0, 0)
sub_prev_next_widget.setLayout(sub_prev_next_grid)
# --- Left Part SubWidget --- #
Sub_left_Part_Widget = QtWidgets.QWidget()
Sub_left_Part_Grid = QtWidgets.QGridLayout()
Sub_left_Part_Grid.addWidget(Sub_Info_widget, 0, 0, 1, 2)
Sub_left_Part_Grid.addWidget(Sub_picked_widget, 1, 0, 1, 2)
Sub_left_Part_Grid.addWidget(Sub_Trace_Widget, 2, 0)
Sub_left_Part_Grid.addWidget(sub_prev_next_widget, 3, 0)
Sub_left_Part_Grid.addWidget(btn_Next_Pick, 5, 0, 1, 2)
Sub_left_Part_Grid.addWidget(btn_Reini, 6, 0, 1, 2)
Sub_left_Part_Grid.addWidget(self.Wave_checkbox, 7, 0)
Sub_left_Part_Grid.addWidget(self.veloc_checkbox, 8, 0)
Sub_left_Part_Grid.addWidget(self.lim_checkbox, 9, 0)
Sub_left_Part_Grid.setContentsMargins(0, 0, 0, 0)
Sub_left_Part_Widget.setLayout(Sub_left_Part_Grid)
# --- upper right subWidget --- #
Sub_upper_right_Widget = QtWidgets.QWidget()
Sub_upper_right_Grid = QtWidgets.QGridLayout()
Sub_upper_right_Grid.addWidget(self.pick_checkbox, 0, 0)
Sub_upper_right_Grid.addWidget(self.main_data_radio, 1, 0)
Sub_upper_right_Grid.addWidget(self.t0_before_radio, 2, 0)
Sub_upper_right_Grid.addWidget(self.t0_after_radio, 3, 0)
Sub_upper_right_Grid.addWidget(self.pick_combo, 4, 0, 1, 2)
Sub_upper_right_Grid.addWidget(btn_Upper, 6, 0, 1, 2)
Sub_upper_right_Grid.addWidget(btn_Conti, 7, 0, 1, 2)
Sub_upper_right_Grid.setContentsMargins(0, 0, 0, 0)
Sub_upper_right_Widget.setLayout(Sub_upper_right_Grid)
# --- Contiguous Trace Groupbox --- #
Conti_Groupbox = QtWidgets.QGroupBox("Shot Gather")
Conti_Grid = QtWidgets.QGridLayout()
Conti_Grid.addWidget(self.tt_picking_radio, 0, 0)
Conti_Grid.addWidget(self.trace_selec_radio, 1, 0)
Conti_Grid.setColumnStretch(1, 100)
Conti_Grid.setContentsMargins(0, 0, 0, 0)
Conti_Groupbox.setLayout(Conti_Grid)
# --- Time and Amplitude Labels SubWidget --- #
Sub_T_and_A_Labels_Widget = QtWidgets.QWidget()
Sub_T_and_A_Labels_Grid = QtWidgets.QGridLayout()
Sub_T_and_A_Labels_Grid.addWidget(t_min_label, 0, 0)
Sub_T_and_A_Labels_Grid.addWidget(t_max_label, 0, 1)
Sub_T_and_A_Labels_Grid.addWidget(A_min_label, 0, 2)
Sub_T_and_A_Labels_Grid.addWidget(A_max_label, 0, 3)
Sub_T_and_A_Labels_Grid.setContentsMargins(0, 0, 0, 0)
Sub_T_and_A_Labels_Widget.setLayout(Sub_T_and_A_Labels_Grid)
# --- Time and Amplitude Edits SubWidget --- #
Sub_T_and_A_Edits_Widget = QtWidgets.QWidget()
Sub_T_and_A_Edits_Grid = QtWidgets.QGridLayout()
Sub_T_and_A_Edits_Grid.addWidget(self.t_min_Edit, 0, 0)
Sub_T_and_A_Edits_Grid.addWidget(self.t_max_Edit, 0, 1)
Sub_T_and_A_Edits_Grid.addWidget(self.A_min_Edit, 0, 2)
Sub_T_and_A_Edits_Grid.addWidget(self.A_max_Edit, 0, 3)
Sub_T_and_A_Edits_Grid.addWidget(btn_Stats, 1, 0, 1, 4)
Sub_T_and_A_Edits_Grid.addWidget(self.save_checkbox, 2, 0, 1, 4)
Sub_T_and_A_Edits_Grid.addWidget(self.jump_checkbox, 3, 0, 1, 4)
Sub_T_and_A_Edits_Grid.setHorizontalSpacing(0)
Sub_T_and_A_Edits_Grid.setContentsMargins(0, 0, 0, 0)
Sub_T_and_A_Edits_Widget.setLayout(Sub_T_and_A_Edits_Grid)
# --- Time and Ampitude Labels and Edits SubWidget --- #
Sub_T_and_A_Widget = QtWidgets.QWidget()
Sub_T_and_A_Grid = QtWidgets.QGridLayout()
Sub_T_and_A_Grid.addWidget(Sub_T_and_A_Labels_Widget, 0, 0)
Sub_T_and_A_Grid.addWidget(Sub_T_and_A_Edits_Widget, 1, 0)
Sub_T_and_A_Grid.setRowStretch(3, 100)
Sub_T_and_A_Grid.setContentsMargins(0, 0, 0, 0)
Sub_T_and_A_Widget.setLayout(Sub_T_and_A_Grid)
# --- Control Center SubWidget --- #
Control_Center_GroupBox = QtWidgets.QGroupBox("Control Center")
Control_Center_Grid = QtWidgets.QGridLayout()
Control_Center_Grid.addWidget(Sub_left_Part_Widget, 0, 0, 4, 1)
Control_Center_Grid.addWidget(Sub_upper_right_Widget, 0, 1)
Control_Center_Grid.addWidget(Conti_Groupbox, 1, 1)
Control_Center_Grid.addWidget(Sub_T_and_A_Widget, 2, 1)
Control_Center_GroupBox.setLayout(Control_Center_Grid)
# --- Master Grid Disposition --- #
master_grid = QtWidgets.QGridLayout()
master_grid.addWidget(self.tool, 0, 0, 1, 3)
master_grid.addWidget(self.uppermanager, 1, 0, 1, 3)
master_grid.addWidget(self.lowermanager, 2, 0, 1, 2)
master_grid.addWidget(Control_Center_GroupBox, 2, 2)
master_grid.setRowStretch(1, 100)
master_grid.setColumnStretch(1, 100)
master_grid.setContentsMargins(10, 10, 10, 10)
master_grid.setVerticalSpacing(0)
self.setLayout(master_grid)
def upper_trace_isClicked(self):
if self.sender().isFlat():
self.sender().setFlat(False)
self.upperFig.isTracingOn = False
else:
self.sender().setFlat(True)
self.upperFig.isTracingOn = True
def lower_trace_isClicked(self):
if self.sender().isFlat():
self.sender().setFlat(False)
self.lowerFig.isTracingOn = False
else:
self.sender().setFlat(True)
self.lowerFig.isTracingOn = True
class UpperFig(FigureCanvasQTAgg):
UpperTracePickedSignal = QtCore.pyqtSignal(bool)
def __init__(self, tt):
fig_width, fig_height = 4, 4
fig = mpl.figure.Figure(figsize=(fig_width, fig_height), facecolor='white')
super(UpperFig, self).__init__(fig)
self.initFig()
self.trc_number = 0
self.tt = tt
self.mpl_connect('button_press_event', self.onclick)
# self.mpl_connect('key_press_event', self.press)
self.isTracingOn = False
def initFig(self):
self.ax = self.figure.add_axes([0.05, 0.13, 0.935, 0.85])
self.ax2 = self.ax.twiny()
self.ax.yaxis.set_ticks_position('left')
self.ax.xaxis.set_ticks_position('bottom')
self.ax.set_ylabel('Amplitude')
self.ax2.yaxis.set_ticks_position('none')
self.ax2.xaxis.set_ticks_position('none')
self.trace, = self.ax.plot([], # TODO: comma?
[],
color='b')
self.picktt = self.ax2.axvline(-100,
ymin=0,
ymax=1,
color='g')
self.picket1 = self.ax2.axvline(-100,
ymin=0,
ymax=1,
color='r')
self.picket2 = self.ax2.axvline(-100,
ymin=0,
ymax=1,
color='r')
self.picket1.set_visible(False)
self.picket2.set_visible(False)
self.picktt.set_visible(False)
self.ax2.get_xaxis().set_visible(False)
self.ax2.get_yaxis().set_visible(False)
def plot_amplitude(self):
self.picket1.set_visible(True)
self.picket2.set_visible(True)
self.picktt.set_visible(True)
n = int(self.tt.Tnum_Edit.text())
A_min = float(self.tt.A_min_Edit.text())
A_max = float(self.tt.A_max_Edit.text())
t_min = float(self.tt.t_min_Edit.text())
t_max = float(self.tt.t_max_Edit.text())
self.trc_number = n - 1
if self.tt.main_data_radio.isChecked():
trace = self.tt.mog.data.rdata[:, n - 1]
y_lim = self.ax.get_ylim()
if self.tt.mog.tt[self.trc_number] != -1:
self.picktt.set_xdata(self.tt.mog.tt[self.trc_number])
if self.tt.pick_combo.currentText() == 'Simple Picking' and self.tt.mog.et[self.trc_number] != -1.0:
self.picket1.set_xdata(self.tt.mog.tt[self.trc_number] -
self.tt.mog.et[self.trc_number])
self.picket2.set_xdata(self.tt.mog.tt[self.trc_number] +
self.tt.mog.et[self.trc_number])
elif self.tt.pick_combo.currentText() == 'Pick with std deviation':
self.picket1.set_xdata(self.tt.mog.tt[self.trc_number] -
self.tt.mog.et[self.trc_number])
self.picket2.set_xdata(self.tt.mog.tt[self.trc_number] +
self.tt.mog.et[self.trc_number])
else:
self.picktt.set_xdata(-100)
self.picket1.set_xdata(-100)
self.picket2.set_xdata(-100)
if self.tt.t0_before_radio.isChecked():
airshot_before = self.tt.mog.av
trace = airshot_before.data.rdata[:, n - 1]
if self.tt.mog.av.tt[self.trc_number] != -1:
self.picktt.set_xdata(airshot_before.tt[self.trc_number])
if self.tt.pick_combo.currentText() == 'Simple Picking' and self.tt.mog.av.tt[self.trc_number] != -1.0:
self.picket1.set_xdata(airshot_before.tt[self.trc_number] -
airshot_before.et[self.trc_number])
self.picket2.set_xdata(airshot_before.tt[self.trc_number] +
airshot_before.et[self.trc_number])
elif self.tt.pick_combo.currentText() == 'Pick with std deviation':
self.picket1.set_xdata(airshot_before.tt[self.trc_number] -
airshot_before.et[self.trc_number])
self.picket2.set_xdata(airshot_before.tt[self.trc_number] +
airshot_before.et[self.trc_number])
else:
self.picktt.set_xdata(-100)
self.picket1.set_xdata(-100)
self.picket2.set_xdata(-100)
if self.tt.t0_after_radio.isChecked():
airshot_after = self.tt.mog.ap
trace = airshot_after.data.rdata[:, n - 1]
if airshot_after.tt[self.trc_number] != -1:
self.picktt.set_xdata(airshot_after.tt[self.trc_number])
if self.tt.pick_combo.currentText() == 'Simple Picking' and airshot_after.tt[self.trc_number] != -1.0:
self.picket1.set_xdata(airshot_after.tt[self.trc_number] -
airshot_after.et[self.trc_number])
self.picket2.set_xdata(airshot_after.tt[self.trc_number] +
airshot_after.et[self.trc_number])
elif self.tt.pick_combo.currentText() == 'Pick with std deviation':
self.picket1.set_xdata(airshot_after.tt[self.trc_number] -
airshot_after.et[self.trc_number])
self.picket2.set_xdata(airshot_after.tt[self.trc_number] +
airshot_after.et[self.trc_number])
else:
self.picktt.set_xdata(-100)
self.picket1.set_xdata(-100)
self.picket2.set_xdata(-100)
if not self.tt.lim_checkbox.isChecked():
self.ax.set_ylim(A_min, A_max)
else:
self.ax.set_ylim(min(trace.flatten()), max(trace.flatten()))
self.ax2.set_xlim(t_min, t_max)
self.ax.set_xlim(t_min, t_max)
if self.tt.main_data_radio.isChecked():
self.trace.set_xdata(self.tt.mog.data.timestp)
if self.tt.t0_before_radio.isChecked():
self.trace.set_xdata(self.tt.mog.av.data.timestp)
if self.tt.t0_after_radio.isChecked():
self.trace.set_xdata(self.tt.mog.ap.data.timestp)
self.trace.set_ydata(trace)
# TODO
if self.tt.Wave_checkbox.isChecked():
ind, wavelet = self.wavelet_filtering(self.tt.mog.data.rdata)
mpl.axes.Axes.set_xlabel(self.ax, ' Time [{}]'.format(self.tt.mog.data.tunits))
self.draw()
def wavelet_filtering(self, rdata):
shape = np.shape(rdata)
nptsptrc, ntrace = shape[0], shape[1]
N = 3
npts = np.ceil(nptsptrc / 2**N) * 2**N
d = npts - nptsptrc
rdata = np.array([[rdata],
[rdata[-1 - d: -1, :]]])
ind_max = np.zeros(ntrace)
inc_wb = np.round(ntrace / 100)
for n in range(ntrace):
trace2 = self.denoise(rdata[:, n], wavelet, N)
def denoise(self, trace, wavelet, N):
swc = swt(trace, N, wavelet)
def onclick(self, event):
if self.isTracingOn is False:
return
self.x, self.y = event.x, event.y
y_lim = self.ax.get_ylim()
x_lim = self.ax.get_xlim()
if event.button == 1:
if self.x is not None and self.y is not None:
if self.tt.main_data_radio.isChecked():
self.tt.mog.tt[self.trc_number] = event.xdata
self.tt.mog.tt_done[self.trc_number] = 1
if self.tt.t0_before_radio.isChecked():
self.tt.mog.av.tt[self.trc_number] = event.xdata
self.tt.mog.av.tt_done[self.trc_number] = 1
self.ax2.set_xlim(x_lim[0], x_lim[-1])
self.ax.set_ylim(y_lim[0], y_lim[-1])
if self.tt.t0_after_radio.isChecked():
self.tt.mog.ap.tt[self.trc_number] = event.xdata
self.tt.mog.ap.tt_done[self.trc_number] = 1
self.ax2.set_xlim(x_lim[0], x_lim[-1])
self.ax.set_ylim(y_lim[0], y_lim[-1])
if self.tt.pick_combo.currentText() == "Simple Picking":
if self.tt.main_data_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.tt[self.trc_number])
if self.tt.t0_before_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.av.tt[self.trc_number])
if self.tt.t0_after_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.ap.tt[self.trc_number])
elif self.tt.pick_combo.currentText() == "Pick with std deviation":
if self.tt.main_data_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.tt[self.trc_number])
self.picket1.set_xdata(self.tt.mog.tt[self.trc_number] -
self.tt.mog.et[self.trc_number])
self.picket2.set_xdata(self.tt.mog.tt[self.trc_number] +
self.tt.mog.et[self.trc_number])
if self.tt.t0_before_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.av.tt[self.trc_number])
self.picket1.set_xdata(self.tt.mog.av.tt[self.trc_number] -
self.tt.mog.av.et[self.trc_number])
self.picket2.set_xdata(self.tt.mog.av.tt[self.trc_number] +
self.tt.mog.av.et[self.trc_number])
if self.tt.t0_after_radio.isChecked():
self.picktt.set_xdata(self.tt.mog.ap.tt[self.trc_number])
self.picket1.set_xdata(self.tt.mog.ap.tt[self.trc_number] -
self.tt.mog.ap.et[self.trc_number])
self.picket2.set_xdata(self.tt.mog.ap.tt[self.trc_number] +
self.tt.mog.ap.et[self.trc_number])
self.UpperTracePickedSignal.emit(True)
elif event.button == 2:
if self.tt.jump_checkbox.isChecked():
self.tt.next_trace_to_pick()
else:
self.tt.next_trace()
elif event.button == 3:
if self.x is not None and self.y is not None:
if self.tt.main_data_radio.isChecked():
self.tt.mog.et[self.trc_number] = np.abs(self.tt.mog.tt[self.trc_number] - event.xdata)
if self.tt.t0_before_radio.isChecked():
self.tt.mog.av.et[self.trc_number] = np.abs(self.tt.mog.av.tt[self.trc_number] - event.xdata)
if self.tt.t0_after_radio.isChecked():
self.tt.mog.ap.et[self.trc_number] = np.abs(self.tt.mog.ap.tt[self.trc_number] - event.xdata)
y_lim = self.ax.get_ylim()
x_lim = self.ax.get_xlim()
if self.tt.main_data_radio.isChecked():
et = np.abs(self.tt.mog.tt[self.trc_number] - event.xdata)
self.picket1.set_xdata(self.tt.mog.tt[self.trc_number] - et)
self.picket2.set_xdata(self.tt.mog.tt[self.trc_number] + et)
if self.tt.t0_before_radio.isChecked():
et = np.abs(self.tt.mog.av.tt[self.trc_number] - event.xdata)
self.picket1.set_xdata(self.tt.mog.av.tt[self.trc_number] - et)
self.picket2.set_xdata(self.tt.mog.av.tt[self.trc_number] + et)
if self.tt.t0_after_radio.isChecked():
et = np.abs(self.tt.mog.ap.tt[self.trc_number] - event.xdata)
self.picket1.set_xdata(self.tt.mog.ap.tt[self.trc_number] - et)
self.picket2.set_xdata(self.tt.mog.ap.tt[self.trc_number] + et)
self.ax.set_ylim(y_lim[0], y_lim[-1])
self.UpperTracePickedSignal.emit(True)
self.draw()
class LowerFig(FigureCanvasQTAgg):
LowerTracePickedSignal = QtCore.pyqtSignal(bool)
def __init__(self, tt):
fig_width, fig_height = 4, 4
fig = mpl.figure.Figure(figsize=(fig_width, fig_height), facecolor='white')
super(LowerFig, self).__init__(fig)
self.initFig()
self.tt = tt
self.mpl_connect('button_press_event', self.onclick)
self.isTracingOn = False
def initFig(self):
self.ax = self.figure.add_axes([0.07, 0.05, 0.9, 0.85])
self.ax.yaxis.set_ticks_position('left')
self.ax.xaxis.set_ticks_position('bottom')
self.shot_gather = self.ax.imshow(np.zeros((2, 2)),
interpolation='none',
cmap='seismic',
aspect='auto')
self.actual_line = self.ax.axvline(-100,
ymin=0,
ymax=1,
color='black')
self.unpicked_square, = self.ax.plot(-100, -100,
marker='s',
color='red',
markersize=10,
lw=0)
self.picked_square, = self.ax.plot(-100, -100,
marker='s',
color='green',
markersize=10,
lw=0)
self.picked_tt_circle, = self.ax.plot(-100, -100,
marker='o',
fillstyle='none',
color='green',
markersize=5,
mew=2,
ls='None')
self.picked_et_circle1, = self.ax.plot(-100, -100,
marker='o',
fillstyle='none',
color='red',
markersize=5,
mew=2,
ls='None')
self.picked_et_circle2, = self.ax.plot(-100, -100,
marker='o',
fillstyle='none',
color='red',
markersize=5,
mew=2,
ls='None')
self.vapp_plot, = self.ax.plot(-100, -100,
marker='o',
fillstyle='none',
color='yellow',
markersize=5,
mew=2,
ls='None')
self.shot_gather.set_visible(False)
self.picked_square.set_visible(False)
self.unpicked_square.set_visible(False)
self.picked_tt_circle.set_visible(False)
self.picked_et_circle1.set_visible(False)
self.picked_et_circle2.set_visible(False)
self.vapp_plot.set_visible(False)
def plot_trace_data(self):
self.shot_gather.set_visible(True)
self.picked_square.set_visible(True)
self.unpicked_square.set_visible(True)
self.picked_tt_circle.set_visible(True)
self.picked_et_circle1.set_visible(True)
self.picked_et_circle2.set_visible(True)
self.vapp_plot.set_visible(True)
n = int(self.tt.Tnum_Edit.text())
mog = self.tt.mog
self.trc_number = n - 1
t_min = float(self.tt.t_min_Edit.text())
t_max = float(self.tt.t_max_Edit.text())
if self.tt.main_data_radio.isChecked():
current_trc = mog.data.Tx_z[n]
z = np.where(mog.data.Tx_z == current_trc)[0]
data = mog.data.rdata[:, z[0]:z[-1]]
cmax = max(np.abs(mog.data.rdata.flatten()))
unpicked_tt_ind = np.where(mog.tt == -1)[0]
picked_tt_ind = np.where(mog.tt != -1)[0]
unpicked_et_ind = np.where(mog.et == -1)[0]
picked_et_ind = np.where(mog.et != -1)[0]
tt_done_ind = np.where(mog.tt_done != 0)[0]
tt_undone_ind = np.where(mog.tt_done == 0)[0]
actual_data = mog.data.rdata
self.picked_tt_circle.set_xdata(picked_tt_ind)
self.picked_tt_circle.set_ydata(self.tt.mog.tt[picked_tt_ind])
self.picked_et_circle1.set_xdata(picked_et_ind)
self.picked_et_circle1.set_ydata(self.tt.mog.tt[picked_et_ind] + self.tt.mog.et[picked_et_ind])
self.picked_et_circle2.set_xdata(picked_et_ind)
self.picked_et_circle2.set_ydata(self.tt.mog.tt[picked_et_ind] - self.tt.mog.et[picked_et_ind])
self.actual_line.set_xdata(n - 1)
self.unpicked_square.set_xdata(tt_undone_ind)
self.unpicked_square.set_ydata(t_max * np.ones(len(tt_undone_ind)))
self.picked_square.set_xdata(tt_done_ind)
self.picked_square.set_ydata(t_max * np.ones(len(tt_done_ind)))
self.shot_gather.set_data(data)
self.shot_gather.autoscale()
self.shot_gather.set_extent([z[0], z[-1], self.tt.mog.data.timestp[-1], self.tt.mog.data.timestp[0]])
if self.tt.veloc_checkbox.isChecked():
vapp = self.calculate_Vapp()
hyp = np.sqrt((mog.data.Tx_x[picked_tt_ind] - mog.data.Rx_x[picked_tt_ind])**2 +
(mog.data.Tx_y[picked_tt_ind] - mog.data.Rx_y[picked_tt_ind])**2 +
(mog.data.Tx_z[picked_tt_ind] - mog.data.Rx_z[picked_tt_ind])**2)
tvapp = hyp / vapp
self.vapp_plot.set_ydata(tvapp)
self.vapp_plot.set_xdata(picked_tt_ind)
else:
self.vapp_plot.set_xdata(-100)
self.vapp_plot.set_ydata(-100)
self.draw()
elif self.tt.t0_before_radio.isChecked():
airshot_before = self.tt.mog.av
data = airshot_before.data.rdata
unpicked_tt_ind = np.where(airshot_before.tt == -1)[0]
picked_tt_ind = np.where(airshot_before.tt != -1)[0]
unpicked_et_ind = np.where(airshot_before.et == -1)[0]
picked_et_ind = np.where(airshot_before.et != -1)[0]