-
Notifications
You must be signed in to change notification settings - Fork 22
/
ebi_ontologies.json
1350 lines (1350 loc) · 67.1 KB
/
ebi_ontologies.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
{
"ontologies": [
{
"id": "uniprotrdfs",
"ontology_purl": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/core.owl"
},
{
"id": "hra",
"uri": "https://purl.humanatlas.io/collection/hra",
"homepage": "https://humanatlas.io",
"ontology_purl": "https://cdn.humanatlas.io/digital-objects/collection/hra-ols/latest/graph.ttl",
"title": "Human Reference Atlas (HRA)",
"description": "The Human Reference Atlas (HRA) is a comprehensive, high-resolution, three-dimensional atlas of all the cells in the healthy human body. The Human Reference Atlas provides standard terminologies and data structures for describing specimens, biological structures, and spatial positions linked to existing ontologies.",
"hierarchical_property": [
"http://purl.org/ccf/ccf_part_of"
],
"label_property": [
"http://purl.org/ccf/ccf_pref_label"
],
"mailing_list": "[email protected]"
},
{
"id": "dcat",
"ontology_purl": "https://www.w3.org/ns/dcat.ttl"
},
{
"id": "biolink",
"ontology_purl": "https://w3id.org/biolink/biolink-model.owl.ttl",
"homepage": "https://biolink.github.io/biolink-model/"
},
{
"id": "addicto",
"is_foundary": "true",
"preferredPrefix": "ADDICTO",
"title": "Addiction Ontology",
"uri": "http://addictovocab.org/addicto.owl",
"description": "The Addiction Ontology (AddictO) is an ontology being developed all aspects of addiction research.",
"homepage": "https://addictovocab.org",
"label_property": ["http://www.w3.org/2000/01/rdf-schema#label"],
"definition_property": ["http://purl.obolibrary.org/obo/IAO_0000115"],
"synonym_property": ["http://purl.obolibrary.org/obo/IAO_0000118"],
"hierarchical_property": ["http://purl.obolibrary.org/obo/BFO_0000050"],
"hidden_property": null,
"base_uri": ["http://addictovocab.org/ADDICTO_"],
"oboSlims": "false",
"ontology_purl": "http://addictovocab.org/addicto.owl"
},
{
"id": "dhba",
"creator": [
"David Osumi-Sutherland",
"Huseyin Kir"
],
"preferredPrefix": "DHBA",
"title": "Developing Human Brain Atlas Ontology",
"uri": "https://purl.brain-bican.org/ontology/dhbao",
"description": "An application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) Structure Graph mapped to Uberon.",
"homepage": "https://purl.brain-bican.org/ontology/dhbao",
"label_property": [
"rdfs:label",
"IAO:0000589",
"http://www.w3.org/2004/02/skos/core#prefLabel"
],
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"https://purl.brain-bican.org/ontology/dhbao/DHBA_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl"
},
{
"id": "hba",
"creator": [
"David Osumi-Sutherland",
"Huseyin Kir"
],
"preferredPrefix": "HBA",
"title": "Human Brain Atlas Ontology",
"uri": "https://purl.brain-bican.org/ontology/hbao",
"description": "An application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) Structure Graph mapped to Uberon.",
"homepage": "https://purl.brain-bican.org/ontology/hbao",
"label_property": [
"rdfs:label",
"IAO:0000589",
"http://www.w3.org/2004/02/skos/core#prefLabel"
],
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"https://purl.brain-bican.org/ontology/hbao/HBA_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "https://purl.brain-bican.org/ontology/hbao/hbao.owl"
},
{
"id": "semapv",
"title": "Semantic Mapping Vocabulary",
"description": "The Semantic Mapping Vocabulary (SEMAPV) captures concepts and relations related to semantic matching, including types of matching (e.g. lexical, manually curated), preprocessing methods and specialised mapping relations.",
"ontology_purl": "https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl",
"homepage": "https://mapping-commons.github.io/semantic-mapping-vocabulary/",
"preferredPrefix": "semapv",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"base_uri": [
"https://w3id.org/semapv/vocab/"
]
},
{
"id": "slm",
"title": "SwissLipids",
"description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.",
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/swisslipids.ttl",
"preferredPrefix": "SLM",
"base_uri": [
"https://swisslipids.org/rdf/SLM_"
]
},
{
"id": "lipidmaps",
"title": "LIPID MAPS",
"ontology_purl": "https://lipidmaps.org/files/?file=sparql_lipids&ext=ttl",
"preferredPrefix": "LIPIDMAPS",
"homepage": "https://lipidmaps.org",
"base_uri": [
"https://www.lipidmaps.org/rdf/"
]
},
{
"id": "oio",
"ontology_purl": "https://raw.githubusercontent.com/geneontology/go-ontology/master/contrib/oboInOwl",
"base_uri": [
"http://www.geneontology.org/formats/oboInOwl#"
]
},
{
"id": "cao",
"ontology_purl": "https://champ.stuchalk.domains.unf.edu/images/ontology/cao.owl",
"base_uri": [
"http://champ-project.org/images/ontology/cao.owl#CAO_"
],
"homepage": "https://champ.stuchalk.domains.unf.edu/cao",
"mailing_list": "[email protected]",
"title": "The Chemical Analysis Ontology",
"preferredPrefix": "CAO",
"creator": [
"Stuart Chalk"
]
},
{
"id": "rdfs",
"ontology_purl": "https://www.w3.org/2000/01/rdf-schema",
"base_uri": [
"http://www.w3.org/2000/01/rdf-schema#"
]
},
{
"id": "owl",
"ontology_purl": "https://www.w3.org/2002/07/owl",
"base_uri": [
"http://www.w3.org/2002/07/owl#"
]
},
{
"id": "skos",
"ontology_purl": "http://www.w3.org/TR/skos-reference/skos.rdf",
"base_uri": [
"http://www.w3.org/2004/02/skos/core#"
]
},
{
"id": "dcterms",
"ontology_purl": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_terms.rdf",
"base_uri": [
"http://purl.org/dc/terms/"
]
},
{
"id": "dc",
"ontology_purl": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_elements.rdf",
"base_uri": [
"http://purl.org/dc/elements/1.1/"
]
},
{
"id": "schemaorg_http",
"ontology_purl": "https://schema.org/version/latest/schemaorg-all-http.rdf",
"base_uri": [
"http://schema.org/"
]
},
{
"id": "schemaorg_https",
"ontology_purl": "https://schema.org/version/latest/schemaorg-all-https.rdf",
"base_uri": [
"https://schema.org/"
]
},
{
"id": "uberon",
"preferred_root_term": [
"http://purl.obolibrary.org/obo/UBERON_0000104",
"http://purl.obolibrary.org/obo/UBERON_0001062"
]
},
{
"id": "phi",
"preferredPrefix": "PHI",
"title": "PHI-base Ontology",
"description": "Pathogen-Host Interaction database Ontology used by Ensembl",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/PHI_"
],
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/phi.owl"
},
{
"id": "msio",
"preferredPrefix": "MSIO",
"title": "Metabolomics Standards Initiative Ontology",
"uri": "http://purl.obolibrary.org/obo/msio.owl",
"description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
"homepage": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO",
"mailing_list": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO/issues",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://purl.obolibrary.org/obo/IAO_0000118"
],
"base_uri": [
"http://purl.obolibrary.org/obo/MSIO_"
],
"reasoner": "NONE",
"ontology_purl": "https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl"
},
{
"id": "dicom",
"preferredPrefix": "DICOM",
"title": "DICOM Controlled Terminology",
"uri": "http://dicom.nema.org/resources/ontology/DCM/",
"description": "DICOM Controlled Terminology",
"homepage": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html",
"mailing_list": "[email protected]",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"base_uri": [
"http://dicom.nema.org/resources/ontology/DCM/"
],
"reasoner": "none",
"oboSlims": false,
"ontology_purl": "ftp://medical.nema.org/MEDICAL/Dicom/Resources/Ontology/DCM/dcm.owl"
},
{
"id": "sdgio",
"preferredPrefix": "SDGIO",
"title": "Sustainable Development Goals Interface Ontology",
"uri": "http://purl.unep.org/sdg/sdgio.owl",
"description": "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.",
"homepage": "https://github.com/SDG-InterfaceOntology/sdgio",
"mailing_list": "https://github.com/SDG-InterfaceOntology/sdgio/issues",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOWL#hasExactSynonym"
],
"base_uri": [
"http://purl.unep.org/sdg/SDGIO_"
],
"oboSlims": false,
"ontology_purl": "http://purl.unep.org/sdg/sdgio.owl"
},
{
"id": "ensemblglossary",
"preferredPrefix": "ENSGLOSS",
"title": "Ensembl Glossary",
"uri": "http://ensembl.org/glossary",
"description": "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.",
"homepage": "http://ensembl.org/glossary",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://ensembl.org/glossary/ENSGLOSS_"
],
"reasoner": "NONE",
"ontology_purl": "https://raw.githubusercontent.com/Ensembl/ensembl-glossary/master/ensembl-glossary.owl"
},
{
"id": "efo",
"preferredPrefix": "EFO",
"title": "Experimental Factor Ontology",
"uri": "http://www.ebi.ac.uk/efo",
"description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org",
"homepage": "http://www.ebi.ac.uk/efo",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115",
"http://www.ebi.ac.uk/efo/definition"
],
"synonym_property": [
"http://www.ebi.ac.uk/efo/alternative_term",
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050",
"http://purl.obolibrary.org/obo/RO_0002202"
],
"hidden_property": [
"http://www.ebi.ac.uk/efo/has_flag"
],
"base_uri": [
"http://www.ebi.ac.uk/efo/EFO_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "http://www.ebi.ac.uk/efo/efo.owl"
},
{
"id": "ordo",
"preferredPrefix": "ORDO",
"description": "The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10).",
"title": "Orphanet Rare Disease Ontology",
"uri": "http://www.orpha.net/ontology/orphanet.owl",
"definition_property": [
"http://www.ebi.ac.uk/efo/definition"
],
"synonym_property": [
"http://www.ebi.ac.uk/efo/alternative_term"
],
"hidden_property": [
"http://www.ebi.ac.uk/efo/has_flag"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050",
"http://www.orpha.net/ORDO/Orphanet_C021"
],
"base_uri": [
"http://www.orpha.net/ORDO/Orphanet_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "http://www.orphadata.org/data/ORDO/ordo_orphanet.owl"
},
{
"id": "teddy",
"preferredPrefix": "TEDDY",
"description": "TEDDY is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems and Synthetic Biology.",
"title": "Terminology for Description of Dynamics",
"uri": "http://identifiers.org/teddy/",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"base_uri": [
"http://identifiers.org/teddy/TEDDY_"
],
"oboSlims": false,
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/teddy-inferred-fixed.owl"
},
{
"id": "edam",
"preferredPrefix": "EDAM",
"title": "Ontology of bioinformatics topics, operations, identifiers, and formats",
"uri": "http://edamontology.org",
"description": "EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use.",
"homepage": "http://edamontology.org",
"mailing_list": "[email protected]",
"definition_property": [
"http://www.geneontology.org/formats/oboInOwl#hasDefinition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
"http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"
],
"base_uri": [
"http://edamontology.org/data_",
"http://edamontology.org/topic_",
"http://edamontology.org/format_",
"http://edamontology.org/identifier_"
],
"oboSlims": false,
"ontology_purl": "https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl"
},
{
"id": "cco",
"preferredPrefix": "CCO",
"title": "Cell Cycle Ontology",
"uri": "http://purl.obolibrary.org/obo/cco",
"description": "The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects.",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/CCO_"
],
"oboSlims": true,
"ontology_purl": "http://www.bio.ntnu.no/ontology/CCO/cco.owl"
},
{
"id": "rexo",
"preferredPrefix": "ReXO",
"title": "Regulation of Gene Expression Ontology",
"uri": "http://www.bio.ntnu.no/ontology/ReXO/rexo.owl",
"description": "Regulation of Gene Expression",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/ReXO_"
],
"oboSlims": true,
"ontology_purl": "http://www.bio.ntnu.no/ontology/ReXO/rexo.rdf"
},
{
"id": "reto",
"preferredPrefix": "ReTO",
"title": "Regulation of Transcription Ontology",
"uri": "http://www.bio.ntnu.no/ontology/ReTO/reto.owl",
"description": "Regulation of Transcription",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/ReTO_"
],
"oboSlims": true,
"ontology_purl": "http://www.bio.ntnu.no/ontology/ReTO/reto.rdf"
},
{
"id": "gexo",
"preferredPrefix": "GeXO",
"title": "Gene Expression Ontology",
"uri": "http://www.bio.ntnu.no/ontology/GeXO/gexo.owl",
"description": "Gene Expression Ontology",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/GeXO_"
],
"oboSlims": true,
"ontology_purl": "http://www.bio.ntnu.no/ontology/GeXO/gexo.rdf"
},
{
"id": "cmpo",
"preferredPrefix": "CMPO",
"title": "Cellular Microscopy Phenotype Ontology",
"uri": "http://www.ebi.ac.uk/cmpo",
"description": "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.",
"homepage": "http://www.ebi.ac.uk/cmpo",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://www.ebi.ac.uk/cmpo/CMPO_"
],
"oboSlims": true,
"reasoner": "EL",
"ontology_purl": "http://www.ebi.ac.uk/cmpo/cmpo.owl"
},
{
"id": "enm",
"preferredPrefix": "ENM",
"title": "eNanoMapper Ontology",
"uri": "http://enanomapper.github.io/ontologies/enanomapper.owl",
"description": "The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. \u003e This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. ",
"homepage": "http://www.enanomapper.net/",
"mailing_list": "https://github.com/enanomapper/ontologies",
"definition_property": [
"http://www.ebi.ac.uk/efo/definition",
"http://purl.obolibrary.org/obo/IAO_0000115",
"http://purl.bioontology.org/ontology/npo#definition",
"http://purl.obolibrary.org/obo#Definition",
"http://purl.org/dc/elements/1.1/description"
],
"synonym_property": [
"http://www.ebi.ac.uk/efo/alternative_term",
"http://purl.obolibrary.org/obo/IAO_0000118"
],
"hierarchical_property": [
"http://www.bioassayontology.org/bao#BAO_0090002",
"http://purl.bioontology.org/ontology/npo#part_of"
],
"base_uri": [
"http://purl.enanomapper.org/onto/ENM_"
],
"oboSlims": false,
"ontology_purl": "http://enanomapper.github.io/ontologies/enanomapper.owl"
},
{
"id": "atol",
"preferredPrefix": "ATOL",
"title": "Animal Trait Ontology for Livestock",
"uri": "file:/C:/Lea/ontologies/versions%20ATOL/atol_v3.0.obo",
"description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.",
"homepage": "http://www.atol-ontology.com",
"mailing_list": "[email protected]",
"definition_property": [
"file:/C:/Lea/ontologies/versions%20ATOL/atol_v3.0.obo#definition"
],
"synonym_property": [
"file:/C:/Lea/ontologies/versions%20ATOL/atol_v3.0.obo#synonymExact"
],
"base_uri": [
"http://purl.org/obo/owlATOL_"
],
"oboSlims": false,
"ontology_purl": "http://www.atol-ontology.com/public/telechargement/atol.owl"
},
{
"id": "eol",
"preferredPrefix": "EOL",
"title": "Environment Ontology for Livestock",
"uri": "file:/C:/Lea/ontologies/environnement/leo.obo",
"description": "L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage",
"homepage": "http://www.atol-ontology.com",
"mailing_list": "[email protected]",
"definition_property": [
"file:/C:/Lea/ontologies/environnement/leo.obo#definition"
],
"synonym_property": [
"file:/C:/Lea/ontologies/environnement/leo.obo#synonymExact"
],
"base_uri": [
"http://purl.org/obo/owlEOL_"
],
"ontology_purl": "http://www.atol-ontology.com/public/telechargement/eol.owl"
},
{
"id": "lbo",
"preferredPrefix": "LBO",
"title": "Livestock Breed Ontology",
"uri": "http://bioportal.bioontology.org/ontologies/LBO",
"description": "A vocabulary for cattle, chicken, horse, pig, and sheep breeds.",
"homepage": "http://bioportal.bioontology.org/ontologies/LBO",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOWL#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/LBO_"
],
"oboSlims": false,
"ontology_purl": "http://data.bioontology.org/ontologies/LBO/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb"
},
{
"id": "probonto",
"preferredPrefix": "PROBONTO",
"title": "Probability Distribution Ontology",
"uri": "http://www.probonto.org/ontology",
"description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than eighty uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulas.",
"homepage": "http://probonto.org",
"mailing_list": "[email protected]",
"definition_property": [
"http://www.probonto.org/core#0000028"
],
"base_uri": [
"http://www.probonto.org/core"
],
"oboSlims": false,
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/probonto.ttl"
},
{
"id": "pride",
"preferredPrefix": "PRIDE",
"title": "PRIDE Controlled Vocabulary",
"uri": "http://purl.obolibrary.org/obo/pride_cv.obo",
"description": "The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.",
"homepage": "https://github.com/PRIDE-Utilities/pride-ontology",
"mailing_list": "https://github.com/PRIDE-Utilities/pride-ontology/issues",
"definition_property": [
"http://purl.obolibrary.org/obo/def"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOWL#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/PRIDE_"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/pride_cv.obo#part_of"
],
"oboSlims": false,
"ontology_purl": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.owl"
},
{
"id": "bao",
"preferredPrefix": "BAO",
"title": "BioAssay Ontology",
"uri": "http://www.bioassayontology.org/bao/bao_complete.owl",
"description": "The BioAssay Ontology (BAO) describes biological screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.",
"homepage": "http://bioassayontology.org",
"mailing_list": "http://bioassayontology.org/wp/contact-us/",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115",
"http://www.ebi.ac.uk/efo/definition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
"http://purl.obolibrary.org/obo/IAO_0000118",
"http://www.ebi.ac.uk/efo/alternative_term"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://www.bioassayontology.org/bao#BAO_"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "http://www.bioassayontology.org/bao/"
},
{
"id": "sio",
"preferredPrefix": "SIO",
"title": "Semanticscience Integrated Ontology",
"uri": "http://semanticscience.org/ontology/sio.owl",
"description": "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.",
"homepage": "https://github.com/micheldumontier/semanticscience",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.org/dc/terms/description"
],
"synonym_property": [
"http://purl.org/dc/terms/alternative",
"http://purl.org/dc/elements/1.1/alternativeName",
"http://purl.org/dc/terms/alternativeName"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://semanticscience.org/resource/SIO_"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl"
},
{
"id": "unimod",
"preferredPrefix": "UNIMOD",
"title": "Unimod protein modification database for mass spectrometry",
"uri": "http://www.unimod.org/obo/unimod.obo",
"description": "Unimod is a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, an d site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
"homepage": "http://www.unimod.org/",
"mailing_list": "[email protected]",
"base_uri": [
"http://purl.obolibrary.org/obo/UNIMOD_"
],
"oboSlims": false,
"reasoner": "NONE",
"ontology_purl": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/unimod.owl"
},
{
"id": "nmrCV",
"preferredPrefix": "NMR",
"title": "nuclear magnetic resonance CV",
"uri": "http://nmrML.org/nmrCV",
"description": "This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model.",
"homepage": "http://nmrml.org/cv/",
"mailing_list": "https://groups.google.com/forum/?hl=en#!forum/nmrml/join",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115",
"http://www.w3.org/2004/02/skos/core#definition",
"http://www.w3.org/2000/01/rdf-schema#comment"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://nmrML.org/nmrCV#NMR"
],
"reasoner": "NONE",
"ontology_purl": "http://nmrml.org/cv/stable/nmrCV.owl"
},
{
"id": "sbo",
"title": "Systems Biology Ontology",
"definition_property": [
"http://www.w3.org/2000/01/rdf-schema#comment"
]
},
{
"id": "ro",
"base_uri": [
"http://purl.obolibrary.org/obo/BFO_0000050",
"http://purl.obolibrary.org/obo/RO_"
]
},
{
"id": "ncbitaxon",
"base_uri": [
"http://purl.obolibrary.org/obo/NCBITaxon_"
]
},
{
"id": "afo",
"preferredPrefix": "AFO",
"title": "Allotrope Merged Ontology Suite",
"description": "Allotrope Merged Ontology Suite",
"uri": "http://purl.allotrope.org/voc/afo/merged/REC/2018/11",
"base_uri": [
"http://purl.allotrope.org/ontologies"
],
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition",
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"reasoner": "EL",
"oboSlims": false,
"ontology_purl": "http://purl.allotrope.org/voc/afo/latest.xml"
},
{
"id": "hpath",
"preferredPrefix": "MC",
"title": "Histopathology Ontology",
"uri": "https://github.com/Novartis/hpath",
"description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.",
"homepage": "https://github.com/Novartis/hpath",
"mailing_list": "https://github.com/Novartis/hpath",
"definition_property": [
"http://www.geneontology.org/formats/oboInOwl#hasDefinition"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://purl.obolibrary.org/obo/MC_"
],
"oboSlims": false,
"reasoner": "None",
"ontology_purl": "https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo"
},
{
"id": "srao",
"preferredPrefix": "SRAO",
"title": "FAIRsharing Subject Ontology (SRAO)",
"uri": "http://www.fairsharing.org/ontology/subject/SRAO.owl",
"description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.",
"homepage": "https://github.com/FAIRsharing/subject-ontology",
"mailing_list": "[email protected]",
"label_property": "http://www.w3.org/2000/01/rdf-schema#label",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://purl.obolibrary.org/obo/IAO_0000118",
"http://www.fairsharing.org/ontology/subject/SRAO_0000279",
"http://www.fairsharing.org/ontology/subject/SRAO_0000278",
"http://www.fairsharing.org/ontology/subject/SRAO_0000269",
"http://www.fairsharing.org/ontology/domain/DRAO_0000001",
"http://www.fairsharing.org/ontology/subject/SRAO_0000276",
"http://www.fairsharing.org/ontology/subject/SRAO_0000317",
"http://www.fairsharing.org/ontology/subject/SRAO_0000272",
"http://www.fairsharing.org/ontology/subject/SRAO_0000292",
"http://www.fairsharing.org/ontology/subject/SRAO_0000268"
],
"base_uri": [
"http://www.fairsharing.org/ontology/subject"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "https://github.com/FAIRsharing/subject-ontology/raw/master/SRAO.owl"
},
{
"id": "hcao",
"preferredPrefix": "HCAO",
"title": "Human Cell Atlas Ontology",
"uri": "https://ontology.archive.data.humancellatlas.org/ontologies/hcao",
"base_uri": [
"http://ontology.data.humancellatlas.org/ontologies/HCA_"
],
"description": "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"reasoner": "EL",
"oboSlims": false,
"ontology_purl": "https://raw.githubusercontent.com/ebi-ait/ontology/master/hcao.owl"
},
{
"id": "amphx",
"preferredPrefix": "AMPHX",
"title": "Amphioxus Development and Anatomy Ontology",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/AMPHX_"
],
"ontology_purl": "http://purl.obolibrary.org/obo/amphx.owl"
},
{
"id": "clyh",
"preferredPrefix": "CLYH",
"title": "Clytia hemisphaerica Development and Anatomy Ontology",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/CLYH_"
],
"ontology_purl": "http://purl.obolibrary.org/obo/clyh.owl"
},
{
"id": "idocovid19",
"preferredPrefix": "IDO-COVID-19",
"title": "The COVID-19 Infectious Disease Ontology",
"uri": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19",
"description": "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.",
"homepage": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://purl.obolibrary.org/obo/IDO-COVID-19"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19"
},
{
"id": "vido",
"preferredPrefix": "VIDO",
"title": "The Virus Infectious Disease Ontology",
"uri": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl",
"description": "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.",
"homepage": "https://github.com/infectious-disease-ontology-extensions/ido-virus",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://purl.obolibrary.org/obo/VIDO_"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl"
},
{
"id": "bcio",
"preferredPrefix": "BCIO",
"title": "The Behaviour Change Intervention Ontology",
"uri": "http://humanbehaviourchange.org/ontology/bcio.owl",
"description": "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.",
"homepage": "https://www.humanbehaviourchange.org/",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://purl.obolibrary.org/obo/IAO_0000118"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://humanbehaviourchange.org/ontology/BCIO_"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "http://humanbehaviourchange.org/ontology/bcio.owl"
},
{
"id": "covoc",
"preferredPrefix": "COVOC",
"title": "COVID-19 Vocabulary Ontology",
"uri": "http://purl.obolibrary.org/obo/covoc.owl",
"description": "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.",
"homepage": "https://github.com/EBISPOT/covoc",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"http://purl.obolibrary.org/obo/COVOC_"
],
"oboSlims": false,
"reasoner": "OWL2",
"ontology_purl": "https://github.com/EBISPOT/covoc/releases/download/current/covoc.owl"
},
{
"id": "om",
"preferredPrefix": "OM",
"title": "Ontology of units of Measure (OM)",
"uri": "http://www.wurvoc.org/vocabularies/om-2.0/",
"description": "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging",
"homepage": "https://github.com/HajoRijgersberg/OM",
"mailing_list": "[email protected]",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050",
"http://purl.obolibrary.org/obo/RO_0002202"